PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G139600.1 | ||||||||
Common Name | PHAVU_007G139600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | C2H2 | ||||||||
Protein Properties | Length: 334aa MW: 37013.9 Da PI: 6.9405 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00078 | 146 | 168 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Phvul.007G139600.1 146 YECKTCNRTFPSFQALGGHRASH 168 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.00028 | 221 | 243 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Phvul.007G139600.1 221 HECSICGAEFTSGQALGGHMRRH 243 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.1E-13 | 145 | 170 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.0E-9 | 145 | 168 | No hit | No description |
PROSITE profile | PS50157 | 10.637 | 146 | 173 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.052 | 146 | 168 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 148 | 168 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.0E-9 | 216 | 243 | No hit | No description |
Pfam | PF13912 | 4.9E-13 | 220 | 245 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.723 | 221 | 243 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 221 | 243 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 223 | 243 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MEAPEELSVG GSKDHTNIVK GKRTKRVRPQ SPIPFVTANS STGEGEGEGQ DCCNVDDNTN 60 TTTNKNYDIN NNNNNSSPTT SSAGLQDSTD EEEDMANCLI LLAQGQSRES HKHAEEDVGM 120 NYAKYSSRKF LEAATLGSSR AGYYVYECKT CNRTFPSFQA LGGHRASHKK PKAMMAIGQE 180 KKQQHLLSSD EEEFQLKTNN KSPFSLQLNT KGNLYNKSKV HECSICGAEF TSGQALGGHM 240 RRHRAPVGIP TTLSFTPLAL EPEEDHPRKK RNMLNLELDL NLPAPEDDQR ESKFSFQSKQ 300 QQQHGQKQQQ QQQQQPPQTS LVLTAPALVD CHY* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G139600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007144239.1 | 0.0 | hypothetical protein PHAVU_007G139600g | ||||
TrEMBL | V7BH81 | 0.0 | V7BH81_PHAVU; Uncharacterized protein | ||||
STRING | XP_007144239.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 2e-69 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G139600.1 |
Entrez Gene | 18625842 |