PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G109700.3
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bZIP
Protein Properties Length: 411aa    MW: 44399.1 Da    PI: 6.9758
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G109700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.84.2e-22264326163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L +eN++Lk+e+++l++ ++k++ e+
  Phvul.006G109700.3 264 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLNTENETLKSEINRLTESSEKMRVEN 326
                         89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.0E-35195IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165968.1E-25116244No hitNo description
Gene3DG3DSA:1.20.5.1705.8E-16259323No hitNo description
PfamPF001702.2E-20264326IPR004827Basic-leucine zipper domain
SMARTSM003383.9E-21264328IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.507266329IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-11267322No hitNo description
CDDcd147027.61E-20269317No hitNo description
PROSITE patternPS000360271286IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MGNNEEEKST KTEKPSSPVT MDQANQTNQP NIHVYPDWAA MQAYYGPRVT MPPYYNSAVA  60
SGHAPHPYMW GPQPMMPPYG PPYAAIYSHG GVYPAVPIAG TPLSMETPLK SSGNTDHGLM  120
KKLKEFDGLA MSIGNGHNES VERGGENRLS QSVDTEGSSD GSDGSTSGAN QTRRKRSREG  180
TPTTDGEGKT EIQSSPISKD TAASNKIVAV APASVAGTIV GPVVSSGMTT VLELRNPSSV  240
HSKANTTSAP QPSVLPAEAW LQNERELKRE RRKQSNRESA RRSRLRKQAE TEELARKVES  300
LNTENETLKS EINRLTESSE KMRVENATLR EKLKSAQLGQ TQEITLNIID SQRATPVSTE  360
NLLSRVNNNS SSNDRTVEDE NGFCENKPNS GAKLHQLLDT SPRADAVAAG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280286RRSRLRK
2280287RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G109700.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311450.0KT031145.1 Glycine max clone HN_CCL_210 BZIP transcription factor (Glyma19g44190.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491555.10.0common plant regulatory factor 1-like isoform X5
SwissprotQ990891e-142CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A1S3TCR80.0A0A1S3TCR8_VIGRR; common plant regulatory factor 1-like isoform X5
STRINGGLYMA03G41590.50.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.18e-94G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]