PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G100700.1
Common NamePHAVU_006G100700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 298aa    MW: 34107.5 Da    PI: 10.0858
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G100700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.71.6e-2110100199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffkv+    + +s +l +p +f++ ++g+ ++  +++l d +g+ W+vkl  +k  gr v+++GW++F+k+++L+egDf+vF++dg s+f 
  Phvul.006G100700.1  10 FFKVF--LLNKASTQLQIPTSFTKFFNGIAPC--KIILIDHDGKCWDVKL--EKIEGRLVFKNGWQQFAKEKNLEEGDFLVFQYDGMSTF- 93 
                         66777..556677789*******999999777..7***************..********************************998888. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          +vk+f+k
  Phvul.006G100700.1  94 -NVKIFSK 100
                         .****998 PP
2B333.48.3e-112052911499
                         T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS.SEE..EEEEE-S CS
                  B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr.sefelvvkvfrk 99 
                         +r+ +pkk ++++++k   +  ++l+de+ rsW v +i + +++r +l++GW +F + n+++eg  + F+  +d+    +el+v+v++k
  Phvul.006G100700.1 205 KRVEIPKKPIKDMEIK-LIG-NIILRDENDRSWPVSIISTANQDRRYLGSGWLDFRQCNNIEEGCQCDFQfvVDKAnVAKELLVRVRSK 291
                         6788999999888655.333.7***************9999999999**********************94333445777888888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-247103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-247103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.4258101IPR003340B3 DNA binding domain
CDDcd100172.11E-201099No hitNo description
PfamPF023621.5E-1810100IPR003340B3 DNA binding domain
SMARTSM010192.1E-1810101IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-12189274IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-11191277IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.095192292IPR003340B3 DNA binding domain
SMARTSM010192.6E-4194292IPR003340B3 DNA binding domain
CDDcd100173.50E-10203266No hitNo description
PfamPF023625.5E-9205291IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MESARQALEF FKVFLLNKAS TQLQIPTSFT KFFNGIAPCK IILIDHDGKC WDVKLEKIEG  60
RLVFKNGWQQ FAKEKNLEEG DFLVFQYDGM STFNVKIFSK TGCRKGATPP SREKVVPIVN  120
LEKDSDEFGN KIQSNGIGKR SLPNTKLKLE SVLEGACPSE GARRRSKRLK EEKDKKNDKK  180
LALTKHVPLQ NPHFQIYFDT PWRLKRVEIP KKPIKDMEIK LIGNIILRDE NDRSWPVSII  240
STANQDRRYL GSGWLDFRQC NNIEEGCQCD FQFVVDKANV AKELLVRVRS KGGLQIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-1581039104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G100700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147158.10.0hypothetical protein PHAVU_006G100700g
TrEMBLV7BMI40.0V7BMI4_PHAVU; Uncharacterized protein
STRINGXP_007147158.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143221518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.14e-20B3 family protein