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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.005G131300.1 |
Common Name | PHAVU_005G131300g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
MYB |
Protein Properties |
Length: 338aa MW: 38069.2 Da PI: 7.3872 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.005G131300.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 51 | 3.3e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
rg+W++eEd +l++++++ G+g +W + +++ g++R++k+c++rw++yl
Phvul.005G131300.1 14 RGPWSPEEDSKLKEYIEKNGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
89*********************************************97 PP
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2 | Myb_DNA-binding | 39.2 | 1.6e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g ++ eEd ++ + + G++ W+ Ia+ ++ gRt++++k++w++
Phvul.005G131300.1 69 GEFSDEEDRIICSLYANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
789******************.*********.***********97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 338 aa
Download sequence Send
to blast |
MGRAPCCDKA NVKRGPWSPE EDSKLKEYIE KNGTGGNWIA LPQKAGLRRC GKSCRLRWLN 60 YLRPNIKHGE FSDEEDRIIC SLYANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKRKLMGL 120 LPASHQRIAP YQHSSTQNPP SSFSSQSSLS SSIYRDYCNN SHYHIPAPTS SFPCLQQISV 180 PSSNYTSTTT SLPLYQNQEP LVSVSPMQYY PTTDSSMLVF GSETSCSSSD GSCSQVSLGR 240 EIKQEEMGFQ NLMFGDQNTN RFMQSQGNIN HDGGEEYVHQ WTEKPNGCFF QTQQTALDYD 300 LEVIKQLIST NSGSNYSNNG YFSIDENKTE KGVYYNY*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |