PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G020400.1
Common NamePHAVU_005G020400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 324aa    MW: 36075.8 Da    PI: 8.0591
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G020400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-05165182320
                         ETTTTEEESSHHHHHHHH CS
             zf-C2H2   3 CpdCgksFsrksnLkrHi 20 
                         C+ C+ksF+r  nL+ H+
  Phvul.005G020400.1 165 CSVCSKSFNRYNNLQMHM 182
                         *****************9 PP
2zf-C2H215.16.7e-05247269123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y C +C+k+F  k + ++H +++
  Phvul.005G020400.1 247 YMCRKCDKTFAVKGDWRTHEKNC 269
                         89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.03E-6157185No hitNo description
SMARTSM003550.44163185IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.699163190IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.6E-5163182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.5E-5163182IPR007087Zinc finger, C2H2
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
SuperFamilySSF576671.62E-6231267No hitNo description
Gene3DG3DSA:3.30.160.602.0E-5243267IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035533247267IPR015880Zinc finger, C2H2-like
SMARTSM00355200273296IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MTDPHSNLYA GTFNFMPLYS HHSSFTSQPN HFSSYPLSHS NTTNTSPPSP PLREALPLIS  60
LIKQKENKSS NAGGEAEEEG LKRRDMDETL LSEDGGDESV AVALHIGLPR VDASDLLGSG  120
KISAEMGEKG EVSVISGHPL DRLNKVQYWI PTPSQILIGP TQFLCSVCSK SFNRYNNLQM  180
HMWGHGSQYR KGPDSLKGTQ PSAMLRLPCF CCAPGCKHNI DHPRARPLKD FRTLQTHYKR  240
KHGIKPYMCR KCDKTFAVKG DWRTHEKNCG KIWYCLCGSD FKHKRSLKDH IKAFGHGHGA  300
VHIDCMQEDE AASEIEHDGD SSM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G020400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148861.10.0hypothetical protein PHAVU_005G020400g
SwissprotQ8W0311e-114ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLV7BUX40.0V7BUX4_PHAVU; Uncharacterized protein
STRINGXP_007148861.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-116C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]