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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G232600.1 | ||||||||
Common Name | PHAVU_003G232600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | AP2 | ||||||||
Protein Properties | Length: 660aa MW: 73664.4 Da PI: 6.746 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.9 | 3.8e-16 | 315 | 374 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g Phvul.003G232600.1 315 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 374 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 45.7 | 1.7e-14 | 419 | 468 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Phvul.003G232600.1 419 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 468 9***************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.11E-16 | 315 | 384 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.80E-22 | 315 | 382 | No hit | No description |
Pfam | PF00847 | 6.5E-13 | 315 | 374 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-29 | 316 | 388 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.203 | 316 | 382 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-16 | 316 | 383 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 317 | 328 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.34E-24 | 417 | 478 | No hit | No description |
SuperFamily | SSF54171 | 2.16E-17 | 417 | 477 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-33 | 418 | 482 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.177 | 418 | 476 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-18 | 418 | 476 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.9E-9 | 419 | 468 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 458 | 478 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 660 aa Download sequence Send to blast |
MKSMENDDSV DLNNQNNWLG FSLSPQINVG VPSHPQPSSA AEVVPTSFYH TAPLNNYGFY 60 YGLEAENVGY YSALPIMPLK SDGSLYGMEA LSRSQTQAMA TTSTPKLENF LGGEAMGTPH 120 YECSVTETMP LSLDSVFYNQ SSRRDPSNQT FQNHLQHIST QHQHQQELQA QHLSYYSTLR 180 NHDMMLEGSK QSQTSDSNLQ IPNMGDDGVP APGLKSWGVR NFQSSHAQES KLIVPVEENG 240 GESGSIGSMA YGDLQSLSLS MSPSSQSSCV TSSHRASPAV IDSVAMDTKK RGPEKVDQKQ 300 IIHRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQSRKGRQV YLGGYDMEEK 360 AARAYDLAAL KYWGPSTHIN FPLENYQNEL EEMKNMTRQE YVAHLRRKSS GFSRGASMYR 420 GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGVN AVTNFDITRY 480 DVEKIMASSN LLSSELARRN RETDSGTQYI DQNRKSSAYD DTQEAILMQK SCESQNDQWK 540 MALYQSSQQL DQNPPRIESD RTNQSFSVAL DSMFHQEVEE SSKVRTHVSN PSSLATSLNS 600 SREGSPDRTS LPMLSGMPST ASKLLSTNPN NVNSWDPSPH LRPALSLPQM PVFAAWTDA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G232600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007155799.1 | 0.0 | hypothetical protein PHAVU_003G232600g | ||||
Swissprot | Q38914 | 1e-161 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | V7CEK3 | 0.0 | V7CEK3_PHAVU; Uncharacterized protein | ||||
STRING | XP_007155799.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-132 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G232600.1 |
Entrez Gene | 18635807 |