PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G009100.1
Common NamePHAVU_002G009100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family AP2
Protein Properties Length: 599aa    MW: 67205.9 Da    PI: 7.3309
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G009100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.7e-16267326155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  ++  g   k ++++lg ++ +e+Aa+a++ a++k++g
  Phvul.002G009100.1 267 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqgrKGRQVYLGGYDMEEKAARAYDMAALKYWG 326
                         78*******************988885566555*************************98 PP
2AP241.24.2e-13371421355
                 AP2   3 ykGV.rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV +++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Phvul.002G009100.1 371 YRGVtSRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 421
                         9****99**********988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-12267326IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-16267336IPR016177DNA-binding domain
CDDcd000181.10E-21267334No hitNo description
Gene3DG3DSA:3.30.730.103.1E-16268335IPR001471AP2/ERF domain
SMARTSM003807.7E-28268340IPR001471AP2/ERF domain
PROSITE profilePS5103219.243268334IPR001471AP2/ERF domain
PRINTSPR003678.0E-6269280IPR001471AP2/ERF domain
CDDcd000183.05E-23369430No hitNo description
SuperFamilySSF541712.88E-16369429IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-18370429IPR001471AP2/ERF domain
SMARTSM003801.6E-30370435IPR001471AP2/ERF domain
PROSITE profilePS5103219.098370429IPR001471AP2/ERF domain
PfamPF008471.4E-7371421IPR001471AP2/ERF domain
PRINTSPR003678.0E-6411431IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MKPVENGDTV NINYQNSWLG FSLSPQMMSI IVPSQSHQTQ PSSAAAETTP PTYYHHTPLH  60
NYGLQGEHVG MCSSLPIMPL KSNVSFYGIE AMSRSQAQAM TTTSAIPLSL DSMLYNQLSC  120
HGSNDPSNQN HVQENISQQQ LSYYSSLRNH DVILEGSKHQ LPCIAEDEAA CLKSWFSRED  180
FPACQVQESR MFVPLEDNGS KSGSIGSITY GDLHSLNLSV SPRRRSSCVT GSPAITDTKK  240
RGLEMVDQNQ KQIVHRKSID TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC KKEGQGRKGR  300
QVYLGGYDME EKAARAYDMA ALKYWGPSSH INFPLENYQN ELEEMKNLTR QEYVAHLRRK  360
SSGFSRGASM YRGVTSRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR  420
GVNAVTNFDI IRYDVEKIMA SDNLLSSEQA KRNRQKEDGT RNEAFVNQNP CTYQHAKETV  480
LMQKSCKMVP DPSSQQLDQN PPRIESCRTV IFHQEVEESS NMGTHLSNPS SLVTSLSSSR  540
EESPDKTSLP MLFGMPSTMS KSFTSIPTSD EDSWELSSNL RPALSLPQMP NFASWTDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G009100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156691.10.0hypothetical protein PHAVU_002G009100g
TrEMBLV7CHE90.0V7CHE9_PHAVU; Uncharacterized protein
STRINGXP_007156691.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-132AP2 family protein