PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.001G163900.1 | ||||||||
Common Name | PHAVU_001G163900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 489aa MW: 53733.4 Da PI: 5.483 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 109.5 | 1.7e-34 | 262 | 316 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav+qLGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+ Phvul.001G163900.1 262 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 316 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.683 | 259 | 319 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.05E-18 | 260 | 316 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.6E-32 | 261 | 318 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.7E-25 | 262 | 316 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.6E-10 | 264 | 315 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.4E-26 | 347 | 394 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0055063 | Biological Process | sulfate ion homeostasis | ||||
GO:0071486 | Biological Process | cellular response to high light intensity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 489 aa Download sequence Send to blast |
MEARPTFSIE RSNAKQHNNM GMSEAFSSSL PVLPMPREGT CPKLSDSQPA FMEKGLKPKP 60 FTHSNHLTTS GAVGHMFSSS PGYSTDLHHS SFSSHEKDPR NTPFISQSLS NMASLPLSYS 120 SNSEPIASTT STPYSNGNSV SWHTDSLPSF LDFPANTSID NSQVESSACN IMATEEYSKR 180 NDWQEWADQL ISDDDPLTSN WNELLADNIP DLEPKALYQA SNSSSQLPIG HQSQSHQQLN 240 VSSGENRIGV APSSSANSVP SKPRMRWTPE LHEAFVEAVN QLGGSERATP KGVLKLMKVE 300 GLTIYHVKSH LQKYRTARYR PESSEGAAEK KLSPIEEISS LDLKTGIEIT EALRLQMEVQ 360 KRLHEQLEIQ RNLQLRIEEQ GRYLQMMFEK QCKSGIETFK ASSSAVESPS GVSSDAIKDS 420 AAKTESETVK VDLCESGPDQ ANGSTKVEES SSKVDEKQDP PECKASENPK QHASEDSSKA 480 PKRPRTED* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-32 | 262 | 320 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-32 | 262 | 320 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-32 | 262 | 320 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-32 | 262 | 320 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-32 | 262 | 320 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-32 | 262 | 320 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-32 | 262 | 320 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-32 | 262 | 320 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 480 | 486 | PKRPRTE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in phosphate starvation signaling (PubMed:11511543, PubMed:17927693, PubMed:26586833). Binds as a dimer to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:11511543, PubMed:20838596, PubMed:26586833). SPX1 is a competitive inhibitor of this DNA-binding (PubMed:25271326). PHR1 binding to its targets is low Pi-dependent (PubMed:25271326). Regulates the expression of miR399 (PubMed:20838596). Regulates the expression of IPS1 (At3g09922), a non-coding RNA that mimics the target of miR399 to block the cleavage of PHO2 under Pi-deficient conditions (PubMed:17643101). Regulates lipid remodeling and triacylglycerol accumulation during phosphorus starvation (PubMed:25680792). Required for the shoot-specific hypoxic response (PubMed:24753539). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). Contributes to the homeostasis of both sulfate and phosphate in plants under phosphate deficiency (PubMed:21261953). Required for adaptation to high light and retaining functional photosynthesis during phosphate starvation (PubMed:21910737). Involved in the coregulation of Zn and Pi homeostasis (PubMed:24420568). {ECO:0000269|PubMed:11511543, ECO:0000269|PubMed:17643101, ECO:0000269|PubMed:17927693, ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:21261953, ECO:0000269|PubMed:21910737, ECO:0000269|PubMed:23788639, ECO:0000269|PubMed:24420568, ECO:0000269|PubMed:24753539, ECO:0000269|PubMed:25271326, ECO:0000269|PubMed:25680792, ECO:0000269|PubMed:26586833}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.001G163900.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Only moderately up-regulated by Pi starvation. {ECO:0000269|PubMed:11511543}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007162589.1 | 0.0 | hypothetical protein PHAVU_001G163900g | ||||
Swissprot | Q94CL7 | 1e-105 | PHR1_ARATH; Protein PHOSPHATE STARVATION RESPONSE 1 | ||||
TrEMBL | V7CYW6 | 0.0 | V7CYW6_PHAVU; Uncharacterized protein | ||||
STRING | XP_007162589.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1512 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28610.1 | 1e-102 | phosphate starvation response 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.001G163900.1 |
Entrez Gene | 18641606 |