PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003798
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 372aa    MW: 41013.7 Da    PI: 4.6815
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55344984PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-33342PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.62e-15245956
        AP2  9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               ++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a ++k++g+
  Pgl003798  2 RP-WGKWAAEIRDPRK---GMRVWLGTFNTAEEAARAYDAEARKIRGN 45
               67.**********954...39************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-18153IPR016177DNA-binding domain
PROSITE profilePS5103220.376152IPR001471AP2/ERF domain
CDDcd000181.96E-28154No hitNo description
Gene3DG3DSA:3.30.730.102.3E-26153IPR001471AP2/ERF domain
PfamPF008471.9E-8144IPR001471AP2/ERF domain
SMARTSM003801.3E-27158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
QRPWGKWAAE IRDPRKGMRV WLGTFNTAEE AARAYDAEAR KIRGNKAKVN FADDLPSPKK  60
SKSKKVVKKL VGSSDIVQGQ KSNPEATTSF LNEAQSFDFN LNEAQRFLQF DSPLPKKSKK  120
VVKKLVGSSD IVQGQKPNLE ATTNFLNEAQ HFYFNLNEAQ RSLSFDSPLQ SSSGESSIPT  180
DMHISSVQTL PVPFYDQVQN INTNNLQMVM LPSQKVASKV QPLENYTESW NLNSDSCIYF  240
DDSCSPQGVD DAKSPKTSSA LSNTIEGDGA NFMDVPVQLI MGISEGSHQD GSSLLDSKVI  300
KPQTSHETLD SNSIEELVVD SCLALLQFLD FEGGTDQSTQ PVDINGTYFP ENINFPAIFN  360
FDGDMPMSGA TQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-18151859ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-171511162ATERF1
3gcc_A1e-171511162ATERF1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.34980.0root| stem
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-18ethylene-responsive element binding protein