PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl003798 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||||||
Protein Properties | Length: 372aa MW: 41013.7 Da PI: 4.6815 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.6 | 2e-15 | 2 | 45 | 9 | 56 |
AP2 9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a ++k++g+ Pgl003798 2 RP-WGKWAAEIRDPRK---GMRVWLGTFNTAEEAARAYDAEARKIRGN 45 67.**********954...39************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.9E-18 | 1 | 53 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.376 | 1 | 52 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.96E-28 | 1 | 54 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-26 | 1 | 53 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-8 | 1 | 44 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-27 | 1 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
QRPWGKWAAE IRDPRKGMRV WLGTFNTAEE AARAYDAEAR KIRGNKAKVN FADDLPSPKK 60 SKSKKVVKKL VGSSDIVQGQ KSNPEATTSF LNEAQSFDFN LNEAQRFLQF DSPLPKKSKK 120 VVKKLVGSSD IVQGQKPNLE ATTNFLNEAQ HFYFNLNEAQ RSLSFDSPLQ SSSGESSIPT 180 DMHISSVQTL PVPFYDQVQN INTNNLQMVM LPSQKVASKV QPLENYTESW NLNSDSCIYF 240 DDSCSPQGVD DAKSPKTSSA LSNTIEGDGA NFMDVPVQLI MGISEGSHQD GSSLLDSKVI 300 KPQTSHETLD SNSIEELVVD SCLALLQFLD FEGGTDQSTQ PVDINGTYFP ENINFPAIFN 360 FDGDMPMSGA TQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-18 | 1 | 51 | 8 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-17 | 1 | 51 | 11 | 62 | ATERF1 |
3gcc_A | 1e-17 | 1 | 51 | 11 | 62 | ATERF1 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.3498 | 0.0 | root| stem |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 2e-18 | ethylene-responsive element binding protein |