PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf18048g00001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 289aa    MW: 33060.2 Da    PI: 8.1006
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf18048g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.42.1e-12157182126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               y   +C+++ +tG+C yGd+CkF+H+
  Peinf101Scf18048g00001.1 157 YQPDICKDYKETGYCGYGDSCKFMHD 182
                               67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-9154187IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7156183IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878156184IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-12157187IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-10157182IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.108.6E-13217270IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.28E-12228271No hitNo description
PfamPF139206.9E-9228270No hitNo description
CDDcd001621.52E-7229270No hitNo description
SMARTSM001846.1E-5229266IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.409229267IPR001841Zinc finger, RING-type
PROSITE patternPS005180244253IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MVEEGENEEA EGKSSIIFTR KKPAAADHKL HFSTGSSKSN TPTESSVDSK ATRFHFESSK  60
KIQLQTDNRA TSTLETETEF SKDARAIRER ALKLAEEALK GKSKTGGDEK LYKGMNQYID  120
YKFGLKREHT ISREKAGGAH GPLRASAHIR VSTRFDYQPD ICKDYKETGY CGYGDSCKFM  180
HDRGDYKSGW QLEKEWDEAE KERKRKLVMV MFEEDDEDAE NDDILPFACF ICRQPFVDPV  240
VTKCKHYFCE HCALKQHAKN KKCFVCNQPT LGIFNTAFEI RKRMAAQGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M5e-6667284113317RING finger protein 113A
5z58_M5e-6667284113317RING finger protein 113A
6ff4_t5e-6667284113317RING finger protein 113A
6ff7_t5e-6667284113317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233105.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-137C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A1J6KDY70.0A0A1J6KDY7_NICAT; Zinc finger ccch domain-containing protein 1
STRINGXP_009609000.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-138C3H family protein