PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf03422g00031.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | CO-like | ||||||||
Protein Properties | Length: 381aa MW: 43842.6 Da PI: 4.5567 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.1 | 1.1e-05 | 1 | 33 | 14 | 40 |
zf-B_box 14 lqlfCedCqqllCedClleeHkg......Htvv 40 +++fC ++ +lC++C ++ H+ H++v Peinf101Scf03422g00031.1 1 ARWFCPADDAFLCQSCDVSVHSAnqlasrHERV 33 689******************667888888876 PP | |||||||
2 | CCT | 68 | 2.5e-23 | 324 | 367 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ Peinf101Scf03422g00031.1 324 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRLKGRFVKRT 367 9*****************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00021 | 7.48E-8 | 1 | 35 | No hit | No description |
PROSITE profile | PS50119 | 9.001 | 1 | 35 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 7.0E-18 | 324 | 366 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.043 | 324 | 366 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
ARWFCPADDA FLCQSCDVSV HSANQLASRH ERVRLETSSN KSNETKSDQN CQPAWHQGFT 60 RKARTPRNGK NKILIGQRKK DEENMVPEIG SDNSPDIENE FENEEQLLYR VPIFDPFAAE 120 LCIVSNEVLD ETTTINDLDI LLNDDDDLGI PEFLSTDMEL AEFAADVESL LGEEFTVVEQ 180 EEQSQLSNAA VEDNKAIKIE VEDEEMRAVV ACHLDPELDM AREALNWDFE YEEAVEQKVM 240 ADTNEFVPSD STDNRIDAKR RLLLRLNHEA VITAWPNQSS PWTDGVRPHF NPDDCWPDFL 300 ETWPGEGGSH QTYGGHVRGG DEGREARVSR YREKRRTRLF SKKIRYEVRK LNAEKRPRLK 360 GRFVKRTSFS EPGFPYLMNK R |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 334 | 350 | RRTRLFSKKIRYEVRKL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 3e-31 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009603861.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 16-like | ||||
Refseq | XP_016434941.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 16-like | ||||
TrEMBL | A0A3Q9WHF4 | 0.0 | A0A3Q9WHF4_PETHY; Zinc finger protein CONSTANS-like 16 | ||||
STRING | XP_009603861.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1539 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68520.1 | 1e-74 | B-box type zinc finger protein with CCT domain |