PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02665g01028.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

SBP

Protein Properties

Length: 1004aa MW: 110882 Da PI: 7.6128

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02665g01028.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.5	1.2e-40	152	229	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC+vhska ++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Peinf101Scf02665g01028.1 152 VCQVEDCQADLSNAKDYHRRHKVCDVHSKAVSALVGNVMQRFCQQCSRFHILQEFDEGKRSCRRRLAGHNKRRRKTHP 229 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.8E-32	146	214	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.949	150	227	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.96E-37	151	232	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.3E-29	153	226	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	1.0E-6	775	895	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	5.12E-6	775	882	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.14E-6	776	883	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1004 aa Download sequence Send to blast
METKIGGKIN QFYGPVVADL NLKAGGKKTM EWDLNDWNWD GDLFTAAPLN SVPSDCRSKQ 60 LFPIGSGVQE ITTGVSNSLS SGSDEMGLGI DKVRKELEKR RRAVVSEDDE LNDEAASLNL 120 KLGGQLYPIM ERGDGKSGKK SKVAGASSNR AVCQVEDCQA DLSNAKDYHR RHKVCDVHSK 180 AVSALVGNVM QRFCQQCSRF HILQEFDEGK RSCRRRLAGH NKRRRKTHPE NVANGASVND 240 ERGSNYLLIS LLRILANIHY QTKDQDLLSH LLRNLASLAS AANERNAAGL QSATPDLRNT 300 GTTSGEICLK DSPQPTGQCM SIPTPEVREK RMGMGGADCG IPQNRGASQP DSLYHRKESI 360 PANANVPATS LAGMKLSNID LNNSYDDSQD GIGKVHNPDA TMNLGNGSTG YPLWLCQEPH 420 KSSPTRISGN SGSTSTLSPS NSSGESRTDR IVFKLFGKDP SDFPTTLRKQ ILDWLAHSPT 480 DIESYIRPGC IILTIYLRMD KSIWEELYCD LSSSLTKLLN ASTDSFWRTG WVYARVQHRV 540 AFIFNGQVVL DTPLPVTSHR NCRISIIKPL AVSASEGVQF LVKGFNLSRP TTRLLCALEG 600 KYLVQGSCTD MMGGVDSYIE HDEPQSLGFP CIMPNITGRG FIEVEDHGLC SSFFPFIVAE 660 KDVCSEIRTL ENIIEVAETA DGSLGETEEL QARDQALDFI HEMGWLLHRS QLQLRLGSGS 720 NLNLFPFERF KWLIEFSVDH AWCAVVKNLL GIFFNGIVDV RQHSSLDIAL QEVGVLHRAV 780 RGNNRSVVEM LLRYSPSGVL DKSGVENQQG RGSYLFRPDT EGPGGLTPLH IVASLDGYDG 840 LLEALIDDPE QIGTEAWRSA RDSTGLTPND YASLRGHYSY IHIVQKKINQ KSSSGHVVVN 900 IPGTLLNSSF KQKLQDDHKS VKVGSLQMEK PLMKPIQRHC RQCERKFSYG NMGTTSVAIY 960 RPAMLSMVAI AAICVCVALL FKSSPEVLYV FKPFRWEQLK YGSS

Sequence ? help Back to Top

Protein Sequence Length: 1004 aa Download sequence Send to blast

METKIGGKIN QFYGPVVADL NLKAGGKKTM EWDLNDWNWD GDLFTAAPLN SVPSDCRSKQ  60
LFPIGSGVQE ITTGVSNSLS SGSDEMGLGI DKVRKELEKR RRAVVSEDDE LNDEAASLNL  120
KLGGQLYPIM ERGDGKSGKK SKVAGASSNR AVCQVEDCQA DLSNAKDYHR RHKVCDVHSK  180
AVSALVGNVM QRFCQQCSRF HILQEFDEGK RSCRRRLAGH NKRRRKTHPE NVANGASVND  240
ERGSNYLLIS LLRILANIHY QTKDQDLLSH LLRNLASLAS AANERNAAGL QSATPDLRNT  300
GTTSGEICLK DSPQPTGQCM SIPTPEVREK RMGMGGADCG IPQNRGASQP DSLYHRKESI  360
PANANVPATS LAGMKLSNID LNNSYDDSQD GIGKVHNPDA TMNLGNGSTG YPLWLCQEPH  420
KSSPTRISGN SGSTSTLSPS NSSGESRTDR IVFKLFGKDP SDFPTTLRKQ ILDWLAHSPT  480
DIESYIRPGC IILTIYLRMD KSIWEELYCD LSSSLTKLLN ASTDSFWRTG WVYARVQHRV  540
AFIFNGQVVL DTPLPVTSHR NCRISIIKPL AVSASEGVQF LVKGFNLSRP TTRLLCALEG  600
KYLVQGSCTD MMGGVDSYIE HDEPQSLGFP CIMPNITGRG FIEVEDHGLC SSFFPFIVAE  660
KDVCSEIRTL ENIIEVAETA DGSLGETEEL QARDQALDFI HEMGWLLHRS QLQLRLGSGS  720
NLNLFPFERF KWLIEFSVDH AWCAVVKNLL GIFFNGIVDV RQHSSLDIAL QEVGVLHRAV  780
RGNNRSVVEM LLRYSPSGVL DKSGVENQQG RGSYLFRPDT EGPGGLTPLH IVASLDGYDG  840
LLEALIDDPE QIGTEAWRSA RDSTGLTPND YASLRGHYSY IHIVQKKINQ KSSSGHVVVN  900
IPGTLLNSSF KQKLQDDHKS VKVGSLQMEK PLMKPIQRHC RQCERKFSYG NMGTTSVAIY  960
RPAMLSMVAI AAICVCVALL FKSSPEVLYV FKPFRWEQLK YGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-31	144	226	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	221	227	KRRRKTH

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	2e-56	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975441	2e-56	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975444	2e-56	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019253402.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
TrEMBL	A0A2K9ZXI9	0.0	A0A2K9ZXI9_PETHY; Squamosa promoter binding-like protein 12d
STRING	Solyc05g053240.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1