PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02339g04016.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 1155aa MW: 129581 Da PI: 9.1108

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02339g04016.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.8	1e-07	67	100	3	38
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 W++e+ ++++a +++G++ Wk++a+ + Rt+ Peinf101Scf02339g04016.1 67 EWSEEDLTRFYQAYRKYGKD-WKKVAAAVK-PRTAD 100 7***************99.****998.78875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.5E-9	63	111	IPR009057	Homeodomain-like
SMART	SM00717	4.7E-4	64	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-4	67	103	IPR009057	Homeodomain-like
CDD	cd00167	2.51E-5	67	102	No hit	No description
Pfam	PF00249	1.9E-6	67	102	IPR001005	SANT/Myb domain
Pfam	PF06584	1.0E-32	654	754	IPR033471	DIRP domain
SMART	SM01135	3.8E-57	654	755	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1155 aa Download sequence Send to blast
LTLCLPDSAF YYRFPKILSM APAKKSRSVN KRFSPTTDIS PSKDGNGDSS KKSLQRKRKL 60 SDMLGSEWSE EDLTRFYQAY RKYGKDWKKV AAAVKPRTAD MVEALYTMNR AYLSLPEGTA 120 SVVGLIAMMT DHYCNLAASD SEQESNEDAG TSRKPQKRAR GKVQPDISRT SEMASPTLAA 180 SNGCLSFLKK KRSGGSRPRA VGKRTPRFPV SFSYENPKSE KYFAPSRQSL KQQEDDTDDD 240 VKIALVLTEA SQRGGSPQVS HTPNRRMDSA MSSPVGTGER KRVKKHVDYA KLLSNEVDEE 300 EGSMEADTGE LSQYKNDLAE TGAAGRTTQK GRRLYGKKVE VDDSSDNHFD DIKEACSGTE 360 EGQRLGVVRG KLDMEATDEK NSRTSLQGTR KRSKKVLFRR DEGSAFDALQ TLADLSLMMP 420 TAENEDESMI QVKDEIDDHI DESGSLEAVR ANRQRDKRGS AGLRSRWSQP LSKFEVASSS 480 TLKHGKVTST DVSAFPEPKQ ARRAQKTMSS KTRKTEGHMN NDVTESQEAE PKEALKKSTN 540 KGKRSSQSAS PKLIKDQEHS SCGDPRTERS DSAQSTAQIP VANQVNLPTK VRSRRKMDLK 600 KPQRQKDLKI SDKSLDDTSA YISALHDRTF SPKKKISNCL SNRHVRRRCT YEWFYSAIDY 660 PWFAKREFVE YLYHVGLGHV PRLTRVEWGV IRSSLGKPRR FSEQFLNEEK EKLNQYRESV 720 RTHYTELREG TREGLPTDLA RPLSVGQRVI AIHPKTREIH DGSVLTVDHS RCRVQFDRPE 780 LGVEFVMDID CMPLNPYENM PTLLTRHADT VDKLFESFNE HKVKALANEY IKFPAGDMDN 840 GDVCFSPPSH SISNLLKQTK VASAEADMQS KSGVMGTATY QQKAYTKPSV VVQIQAKEAD 900 VQALADLTRA LDKKDAVVSE LRHMNDVLEN QKSNDFSLKD SEPFKKQYAA VLIQLNEVNE 960 QVSSALLRLR QRNTYTGSIP LPLPRPVPNL ADPSTLSTFD HCTSQPHESG FLVNEIIESS 1020 KIKARTMVDA AVQAMLSLTR RDNTTEKIEE AIDYVNDRIL LDDSCMPTPP DPKSKTMSDR 1080 NETEIPSELI TKCVATLLMI QKCTERQFPP ADMAKVLDSA VASLQPCCSQ NFPVYAEIQK 1140 CMGIIRNQIL ALIPT

Sequence ? help Back to Top

Protein Sequence Length: 1155 aa Download sequence Send to blast

LTLCLPDSAF YYRFPKILSM APAKKSRSVN KRFSPTTDIS PSKDGNGDSS KKSLQRKRKL  60
SDMLGSEWSE EDLTRFYQAY RKYGKDWKKV AAAVKPRTAD MVEALYTMNR AYLSLPEGTA  120
SVVGLIAMMT DHYCNLAASD SEQESNEDAG TSRKPQKRAR GKVQPDISRT SEMASPTLAA  180
SNGCLSFLKK KRSGGSRPRA VGKRTPRFPV SFSYENPKSE KYFAPSRQSL KQQEDDTDDD  240
VKIALVLTEA SQRGGSPQVS HTPNRRMDSA MSSPVGTGER KRVKKHVDYA KLLSNEVDEE  300
EGSMEADTGE LSQYKNDLAE TGAAGRTTQK GRRLYGKKVE VDDSSDNHFD DIKEACSGTE  360
EGQRLGVVRG KLDMEATDEK NSRTSLQGTR KRSKKVLFRR DEGSAFDALQ TLADLSLMMP  420
TAENEDESMI QVKDEIDDHI DESGSLEAVR ANRQRDKRGS AGLRSRWSQP LSKFEVASSS  480
TLKHGKVTST DVSAFPEPKQ ARRAQKTMSS KTRKTEGHMN NDVTESQEAE PKEALKKSTN  540
KGKRSSQSAS PKLIKDQEHS SCGDPRTERS DSAQSTAQIP VANQVNLPTK VRSRRKMDLK  600
KPQRQKDLKI SDKSLDDTSA YISALHDRTF SPKKKISNCL SNRHVRRRCT YEWFYSAIDY  660
PWFAKREFVE YLYHVGLGHV PRLTRVEWGV IRSSLGKPRR FSEQFLNEEK EKLNQYRESV  720
RTHYTELREG TREGLPTDLA RPLSVGQRVI AIHPKTREIH DGSVLTVDHS RCRVQFDRPE  780
LGVEFVMDID CMPLNPYENM PTLLTRHADT VDKLFESFNE HKVKALANEY IKFPAGDMDN  840
GDVCFSPPSH SISNLLKQTK VASAEADMQS KSGVMGTATY QQKAYTKPSV VVQIQAKEAD  900
VQALADLTRA LDKKDAVVSE LRHMNDVLEN QKSNDFSLKD SEPFKKQYAA VLIQLNEVNE  960
QVSSALLRLR QRNTYTGSIP LPLPRPVPNL ADPSTLSTFD HCTSQPHESG FLVNEIIESS  1020
KIKARTMVDA AVQAMLSLTR RDNTTEKIEE AIDYVNDRIL LDDSCMPTPP DPKSKTMSDR  1080
NETEIPSELI TKCVATLLMI QKCTERQFPP ADMAKVLDSA VASLQPCCSQ NFPVYAEIQK  1140
CMGIIRNQIL ALIPT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-107	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009595580.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Refseq	XP_009595581.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Refseq	XP_018624867.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A1S3X518	0.0	A0A1S3X518_TOBAC; protein ALWAYS EARLY 3-like isoform X1
STRING	XP_009595580.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3312	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]