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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01889g07040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | FAR1 | ||||||||
Protein Properties | Length: 447aa MW: 51127.5 Da PI: 5.3094 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 71.7 | 1.6e-22 | 129 | 213 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 ++Yn YAk +GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++leH Peinf101Scf01889g07040.1 129 NYYNCYAKVLGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAN-----SRRKETRTGCLAMIRLRLVESNRWRVDEVKLEH 208 69****************************************99888.....8999***************************** PP FAR1 86 nHela 90 nH++ Peinf101Scf01889g07040.1 209 NHQFD 213 **986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.8E-20 | 129 | 213 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 9.804 | 328 | 364 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.3E-5 | 339 | 366 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 5.8E-5 | 340 | 362 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MEECLGSNEQ LPEDEGCDNG VDREEVFDIR CNGIESDGDQ VLNVDAIEVE TAAGQILEAE 60 KNCEHVLDFE SSDLRENGHQ LLEFQSNGLE DRRGGDTTII DDHTCSSLGK SYPAPVAGME 120 FESYEDAYNY YNCYAKVLGF AIRVKSSWTK RNSKEKRGAV LCCNCEGFKT MKEANSRRKE 180 TRTGCLAMIR LRLVESNRWR VDEVKLEHNH QFDPDRVQYS KSHKKMDAGV KRKLEPAVDV 240 EVRTIKLYRT PANETLGYGS SDERAVSGQI DGSTRLKLKE EIFLKFQDEM ALMSNCSDIA 300 QIHANGPIIT YIVKERGVEG DMRDAREFEV TYDKMGIEVR CICSCFNFRG YLCRHALSVL 360 NYNGIEEIPN HYILTRWRKD FQRLFAPEVG SSNIDISNPV QRFDHLHRRA IQIVEEGMIS 420 QDHYMVAWQA FKESLNKVRL AADKHVP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009631084.1 | 1e-165 | PREDICTED: protein FAR1-RELATED SEQUENCE 8 isoform X2 | ||||
Swissprot | Q9S793 | 2e-56 | FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8 | ||||
TrEMBL | A0A2H5QDR2 | 1e-180 | A0A2H5QDR2_CITUN; Uncharacterized protein (Fragment) | ||||
STRING | XP_009631083.1 | 1e-163 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1347 | 19 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80010.1 | 6e-59 | FAR1-related sequence 8 |
Publications ? help Back to Top | |||
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