PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01633g08025.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LFY
Protein Properties Length: 412aa    MW: 46171 Da    PI: 6.6815
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01633g08025.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY640.13.4e-19513941386
                   FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseap.........leaaaaaaarklreleelfkayGvryltvakiaelGftvs 76 
                               mdpeafsaslfkwdpr a+ +pp+rlle  a +++p         l  a ++ +r+l +lee+f+ayG+ry+t+akiaelGftv+
  Peinf101Scf01633g08025.1   1 MDPEAFSASLFKWDPRGAM-PPPSRLLEAVAPPQPPppplppalpLPPAYSIRTRELGGLEEMFQAYGIRYYTAAKIAELGFTVN 84 
                               9**************9877.77778877776666556777665444455555556666*************************** PP

                   FLO_LFY  77 tLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeg.lseepvqe.eke 159
                               tL+dmkd+eldd+m+sls+ifr++llvGeryGikaa+raerrrleeee   +rr++ls+  +++ldalsqe+ lseepvq+ e+e
  Peinf101Scf01633g08025.1  85 TLLDMKDDELDDMMNSLSQIFRWELLVGERYGIKAAIRAERRRLEEEE--GRRRHILSDGGTNVLDALSQEVgLSEEPVQQqERE 167
                               **********************************************87..999999***************55*****9995666 PP

                   FLO_LFY 160 aagsggeglgeaelvaaee.kkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevar 243
                               aagsgg+g +++e+va    + +++++kk    +++r ++ e+ ++++e +e++ed + +++g + +erqrehPfivtepgevar
  Peinf101Scf01633g08025.1 168 AAGSGGGG-TAWEVVAPGGgRMRQRRRKKVVVGRERRGSSMEEDEDTEEGQEDNEDYNVNEGGGGISERQREHPFIVTEPGEVAR 251
                               88887777.9999999888455666666666668888888877777777777777777778888888****************** PP

                   FLO_LFY 244 gkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafke 328
                               gkknGLDYLf+LyeqCr+fL+qvq+iakerGekcPtkvtnqvfr+akkagasyinkPkmrhYvhCYalhcLde+asnalrrafke
  Peinf101Scf01633g08025.1 252 GKKNGLDYLFHLYEQCRDFLIQVQNIAKERGEKCPTKVTNQVFRFAKKAGASYINKPKMRHYVHCYALHCLDEDASNALRRAFKE 336
                               ************************************************************************************* PP

                   FLO_LFY 329 rgenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerskas 386
                               rgenvGawrqacykplvaiaarqgwdida+fn hprLsiWYvPtkLrqLCh ers+a+
  Peinf101Scf01633g08025.1 337 RGENVGAWRQACYKPLVAIAARQGWDIDAIFNGHPRLSIWYVPTKLRQLCHSERSNAA 394
                               *******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.1E-2081394IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDPEAFSASL FKWDPRGAMP PPSRLLEAVA PPQPPPPPLP PALPLPPAYS IRTRELGGLE  60
EMFQAYGIRY YTAAKIAELG FTVNTLLDMK DDELDDMMNS LSQIFRWELL VGERYGIKAA  120
IRAERRRLEE EEGRRRHILS DGGTNVLDAL SQEVGLSEEP VQQQEREAAG SGGGGTAWEV  180
VAPGGGRMRQ RRRKKVVVGR ERRGSSMEED EDTEEGQEDN EDYNVNEGGG GISERQREHP  240
FIVTEPGEVA RGKKNGLDYL FHLYEQCRDF LIQVQNIAKE RGEKCPTKVT NQVFRFAKKA  300
GASYINKPKM RHYVHCYALH CLDEDASNAL RRAFKERGEN VGAWRQACYK PLVAIAARQG  360
WDIDAIFNGH PRLSIWYVPT KLRQLCHSER SNAATAASTS VSGGGVDHLP HF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1092334043186PROTEIN LEAFY
2vy2_A1e-1092334043186PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for the specification of floral meristem identity.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0301710.0AF030171.1 Petunia x hybrida ALF protein (alf) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009614003.10.0PREDICTED: floricaula/leafy homolog 1 isoform X1
SwissprotO226210.0ALF_PETHY; Protein ALF
TrEMBLA0A1U7WPT30.0A0A1U7WPT3_NICSY; floricaula/leafy homolog 2 isoform X1
STRINGXP_009614003.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66682333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-146floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Souer E, et al.
    Genetic control of branching pattern and floral identity during Petunia inflorescence development.
    Development, 1998. 125(4): p. 733-42
    [PMID:9435293]