PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01452g05007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | TCP | ||||||||
Protein Properties | Length: 352aa MW: 37645.8 Da PI: 4.8851 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.6 | 7.7e-37 | 80 | 184 | 3 | 107 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 +k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ +++ + Peinf101Scf01452g05007.1 80 LAKRSSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVsVNGTLKI------ 158 689************************************************************8888844421111111...... PP TCP 87 sg......kaaksaakskksqksaasa 107 + +++ ++ k++++++ ++++ Peinf101Scf01452g05007.1 159 -PttspatNNEVENLKKRRKRAANSEF 184 .11111112223333333333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.5E-30 | 84 | 177 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.342 | 85 | 139 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MASIENKQNS EQEDEEKMLS PDDPLLGDSH EYTISAVGNV TDTEGGVGQM LKEEQEDDDN 60 NNNNNVGLNM QLAKVEPKPL AKRSSKDRHT KVEGRGRRIR MPAACAARIF QLTRELGHKS 120 DGETIRWLLE RAEPAIIEAT GTGTVPAIAV SVNGTLKIPT TSPATNNEVE NLKKRRKRAA 180 NSEFYDVHDH DQSSFAPVAP IAAPQGLLPV WTMGSSNGLV PTTAGTFFMY PPSAGPSNQP 240 QLWATPIFNV PGRPISNYVS AMQPGISYAA AGVCGGEVQG SSSNSDGSGD KLVNVVSTMA 300 PSSSSISGTT TAATSTTQML RDFSLEIYDK RELQFMVGSV SSENDQSPSS KS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 176 | KKRRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00667 | PBM | Transfer from GSVIVG01027588001 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362699.1 | 1e-164 | PREDICTED: transcription factor TCP19 | ||||
Swissprot | O64647 | 3e-74 | TCP9_ARATH; Transcription factor TCP9 | ||||
Swissprot | Q9LT89 | 9e-75 | TCP19_ARATH; Transcription factor TCP19 | ||||
TrEMBL | M1C8W5 | 1e-163 | M1C8W5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400062327 | 1e-163 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 7e-74 | TCP family protein |