PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01416g01011.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 339aa    MW: 38119.3 Da    PI: 5.2383
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01416g01011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-12175200126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               y   +C+++ +tG+C yGd+CkF+H+
  Peinf101Scf01416g01011.1 175 YQPDICKDYKETGYCGYGDSCKFMHD 200
                               67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.09E-9173205IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878174202IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7174201IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10175200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12175205IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.0E-10243281IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578503.28E-10252280No hitNo description
CDDcd001621.83E-6253279No hitNo description
PROSITE profilePS500898.535253276IPR001841Zinc finger, RING-type
PfamPF000976.9E-6253281IPR018957Zinc finger, C3HC4 RING-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDNSNTISNA GDAESEQPTT AEGENEDAEG ERSVIYTKKK PAAADNKLHF STGPSKSNTP  60
TESNVDSKAT RFHFESSKEI QVQNDSRATA TLETETEFSK DARAIRERAL KLADEALKGK  120
SKTGGDEKLY KGMNQYTDYK AGLRREHTIS SEKAGGAHGP LRASAHIRVS ARFDYQPDIC  180
KDYKETGYCG YGDSCKFMHD RGDYKSGWQL EREWDEAEKA RKRKLAMGML EEDDEDAEKS  240
DEDDDDDALP FACFICREPF VDPVMTKCKH YFCEHCALKI STSYKLFYVS FVPLRASAME  300
YATFDKWPPP RTTWVVPLGM EFRTTATAKL LPSTTLTLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-5685289113298RING finger protein 113A
5z58_M2e-5685289113298RING finger protein 113A
6ff4_t2e-5685289113298RING finger protein 113A
6ff7_t2e-5685289113298RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609000.11e-178PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_016502602.11e-178PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_018628567.11e-178PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-129C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A1S4CMV01e-176A0A1S4CMV0_TOBAC; zinc finger CCCH domain-containing protein 1-like
STRINGXP_009609000.11e-177(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-131C3H family protein