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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01083g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 71aa MW: 8306.63 Da PI: 10.1823 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 22.5 | 1.4e-07 | 16 | 37 | 2 | 23 |
---SHHHHHHHHHHHHHHHHHH CS SRF-TF 2 rienksnrqvtfskRrngilKK 23 +i+n+ r++t+skRr g+ KK Peinf101Scf01083g00010.1 16 KIDNEDDRYTTLSKRRSGLYKK 37 599******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.082 | 7 | 37 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.58E-9 | 7 | 55 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.5E-6 | 16 | 37 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 71 aa Download sequence Send to blast |
MEGKMTKGRQ KIPMVKIDNE DDRYTTLSKR RSGLYKKPFS FFHPTPEAII DRFLYPNMQL 60 SESTHLIATL S |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019232666.1 | 1e-31 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A1S4ABV1 | 1e-29 | A0A1S4ABV1_TOBAC; agamous-like MADS-box protein AGL61 | ||||
STRING | XP_009765100.1 | 2e-30 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA382 | 20 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 7e-15 | AGAMOUS-like 61 |