PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00962g12025.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 131aa    MW: 14714.5 Da    PI: 9.2811
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00962g12025.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH406.5e-1399124126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               y   +C+++ +tG+C yGd+CkF+H+
  Peinf101Scf00962g12025.1  99 YQPDICKDYKETGYCGYGDSCKFMHD 124
                               67789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.49E-1096129IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-798125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.87898126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-1399129IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-1099124IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MRKIQVQTDN RATASLETET EFSKDARAIR EKALKLVEEA LKGKTKTGGG EKLYKGMNQY  60
IDYQAGLRRE YTISSEKAGG AHGPLRASAH IRVSARFDYQ PDICKDYKET GYCGYGDSCK  120
FMHDRGDYKS G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M8e-329131113229RING finger protein 113A
5z58_M8e-329131113229RING finger protein 113A
6ff4_t8e-329131113229RING finger protein 113A
6ff7_t8e-329131113229RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2265101e-123AC226510.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0172H10, complete sequence.
GenBankHG9755141e-123HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609000.12e-81PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_016502602.12e-81PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_018628567.12e-81PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX849e-69C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A1S4CMV05e-80A0A1S4CMV0_TOBAC; zinc finger CCCH domain-containing protein 1-like
STRINGXP_009609000.18e-81(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.19e-62C3H family protein