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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00951g07003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 150aa MW: 17771.9 Da PI: 4.5518 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.4 | 1e-14 | 16 | 58 | 2 | 44 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +ien+ r+ tfskRr+g+ KKA+EL + d+++ vi+fs+t Peinf101Scf00951g07003.1 16 KIENEDDRYATFSKRRTGLYKKASELVKMSDVDIGVILFSPTA 58 59**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 18.923 | 7 | 57 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.8E-15 | 7 | 68 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 3.05E-21 | 8 | 57 | No hit | No description |
SuperFamily | SSF55455 | 1.07E-17 | 8 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-10 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-17 | 16 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-10 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-10 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MEYKKTLGRQ KIPMIKIENE DDRYATFSKR RTGLYKKASE LVKMSDVDIG VILFSPTAES 60 IVDRFLSPNR QLSESSRLVA AHSRNRVNEI YNRLDEYDII EDAISDQFFE PDEMNEADQR 120 SWWKSIEDFN EDEVTKFEVD LAKFCCFRYD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019250901.1 | 9e-59 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A1J6IHL9 | 2e-57 | A0A1J6IHL9_NICAT; Agamous-like mads-box protein agl61 (Fragment) | ||||
STRING | XP_009595152.1 | 8e-58 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA382 | 20 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 7e-21 | AGAMOUS-like 61 |