PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00185g04020.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family Trihelix
Protein Properties Length: 371aa    MW: 42423.5 Da    PI: 5.7277
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00185g04020.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.31.2e-2464141285
                  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                               W ++e++aLi +rre+++ ++++k++k+lW+++s kmre+gf rsp++C++kw+nl k++kk ke +++       ++  f+++
  Peinf101Scf00185g04020.1  64 WVHEETRALISLRREIDSLFNTSKSNKHLWDQISLKMREKGFDRSPTMCTDKWRNLLKEFKKAKEKNGSV------KMNCFKEI 141
                               *******************************************************************985......34446555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-455125IPR009057Homeodomain-like
PROSITE profilePS500908.53756120IPR017877Myb-like domain
SMARTSM007172.6E-460122IPR001005SANT/Myb domain
CDDcd122036.41E-2862127No hitNo description
PfamPF138371.3E-1863143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MYMSNKPQPI DFYKQESLAT EDPQTHKMIL DPQQLLTTDT TSSGGEENPS SSDIKTPKKR  60
AETWVHEETR ALISLRREID SLFNTSKSNK HLWDQISLKM REKGFDRSPT MCTDKWRNLL  120
KEFKKAKEKN GSVKMNCFKE IEEILRDRSN GGGGYKSPPA PKVDAFMQFA EKGLDDTSIT  180
FGPVEENGRP TLNLERRLDH DGHPLAITAA DAVTASGVSP WNWRETPGTG EQSQSYEGRV  240
ISVKWGDYTK RIGIDGTADA IKEAIKSAFR LRTKRAFWLE DEDNIVRTLD RDMPLGNYIL  300
HVDEGLTVKV CMYDEADHLP VHTEDKTFYS EDDFRDFLSR RSWTCLREFN GYRNVDSMDE  360
LCPGAVYRGV N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-3858140186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00640PBMTransfer from MDP0000164819Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016569813.10.0PREDICTED: trihelix transcription factor GT-4-like isoform X1
SwissprotQ9LU921e-167TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBLA0A2G2WYF40.0A0A2G2WYF4_CAPBA; Uncharacterized protein
TrEMBLA0A2G3CMH90.0A0A2G3CMH9_CAPCH; Trihelix transcription factor GT-1
STRINGXP_009784713.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51132136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25990.11e-166Trihelix family protein