PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01161g00121.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family AP2
Protein Properties Length: 607aa    MW: 67328.5 Da    PI: 7.2027
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01161g00121.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.11.8e-12259315155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Peaxi162Scf01161g00121.1 259 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 315
                               78*******************77776664346655.77******************98 PP
2AP245.42e-14360409355
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Peaxi162Scf01161g00121.1 360 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 409
                               9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.40E-19259323No hitNo description
PfamPF008471.1E-9259315IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-14259325IPR016177DNA-binding domain
SMARTSM003801.6E-22260329IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-12260324IPR001471AP2/ERF domain
PROSITE profilePS5103217.359260323IPR001471AP2/ERF domain
PRINTSPR003672.7E-6261272IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18358419IPR016177DNA-binding domain
CDDcd000183.19E-25358419No hitNo description
SMARTSM003804.9E-34359423IPR001471AP2/ERF domain
PROSITE profilePS5103219.282359417IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-18359417IPR001471AP2/ERF domain
PfamPF008479.6E-10360409IPR001471AP2/ERF domain
PRINTSPR003672.7E-6399419IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MKSMNDDNNN NNDHNAAVNS NWLGFSLSPH MKMESEPQQN HHQYNHQTSQ SYYLTSSPMN  60
GYGVGEHSPF TMVQSSTSPK LEDFLGGASQ YGSHEREAMA LSLDSLYYHQ NEEMQVHNHH  120
AYYSTMQCHG LYQDSLLEET KPAQMTENEL KSWGHYAEQQ QHAIDQHINA TCSMVAATGA  180
GSGGGTCGSG GGTVGCNNDL QSLSLSMNPG SQSSCVTPRQ NNELECVASM ETKKRGSGKV  240
VQKQPVHRKS IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCKKEGQTRK GRQGGYDMEE  300
KAARAYDLAA LKYWGPSTHI NFPLENYQKE LEEMKNMTRQ EYVAHLRRKS SGFSRGASMY  360
RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DVAAIKFRGV NAVTNFDISR  420
YDVEKIMASN TLPAGEFARR TKEREPVESI EYNIASHKNE ECVQQDNNGN VPDWKMVLYQ  480
SSNASLGLLT DKSTNMGNYR NPTFSMALQD LIGIDTMNSS NQAIIDEQNK IGGSHFSNAS  540
SLVTSLSSSR EASPDKSAAG SLVFAAKPTK FAVPATNHVN ACIPSAQLRP IPVSMAHLPV  600
FAALNDA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7547960.0KF754796.1 Petunia x hybrida cultivar W115-Mitchell aintegumenta mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019239081.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-144CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2H4G2880.0A0A2H4G288_PETHY; ANT2
STRINGPGSC0003DMT4000125880.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20742460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-141AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]