PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00878g00327.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 653aa MW: 73367.4 Da PI: 9.9167 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.3 | 1.7e-08 | 4 | 37 | 2 | 36 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36 + W+t+E++ll+ avk++G ++W++++ +++ +R Peaxi162Scf00878g00327.1 4 KTWSTWEELLLAFAVKRHGLKDWESVSMELQ-NRI 37 57*****************************.774 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.423 | 1 | 55 | IPR017877 | Myb-like domain |
SMART | SM00717 | 7.2E-4 | 2 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-7 | 4 | 37 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.04E-7 | 4 | 79 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-5 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.60E-5 | 5 | 54 | No hit | No description |
SMART | SM00297 | 1.1E-16 | 284 | 393 | IPR001487 | Bromodomain |
SuperFamily | SSF47370 | 7.98E-18 | 292 | 390 | IPR001487 | Bromodomain |
Gene3D | G3DSA:1.20.920.10 | 4.6E-16 | 293 | 395 | IPR001487 | Bromodomain |
CDD | cd04369 | 1.54E-15 | 295 | 388 | No hit | No description |
Pfam | PF00439 | 1.1E-10 | 299 | 378 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 12.264 | 303 | 374 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 653 aa Download sequence Send to blast |
MEEKTWSTWE ELLLAFAVKR HGLKDWESVS MELQNRITSS LFTPQICKDK YHHLRRRFIT 60 FHDDDEKING HDEIVGEDVT IPWIEELRQL RVAELKQEVQ RYDLSIQSLQ LKVKKMEEER 120 ELSLKEEGEK PDLDDVKEER SQNDKNSGAD AKPDDFTGKP VSSEDSDREN RSCNESNSTE 180 NKRTGLKNEP DLVKPVQEVV IIKPVSEEDS CNDSTSSDKH EGEKKIVASR DDSGDLRGDD 240 SVSESKEVGT KESSDVQSTA SLSKRKKRSS GGGDAAEMGS PAIGIIIKTA KSEPLIEFLD 300 IIRSHKRGSV FKRRLDSQKT DKYKNMIRQH MDLEMVQARI DEGSYCSCPA KFYLDLLLIF 360 NNAIVYFPKS SPESTAANEL RGIVMEEYKK NRTQSKDQSP GPEPGPVPVM IQPKPELERS 420 DSLLAKHKST APIVVCRKRS SISAKAAASG NNSKPEKQAD IKPPLNPKPP IKSSSNEEDS 480 SIKVGIKEKP VTGVRSMRRS SKGRPTNVSQ SNTNQNTNIK QTTSSNTEKK EDAKPEKKKE 540 EAKKRGAAAD FLKRIKKNSP TKGTLMEALK NPTEEVVVKG NKREPQKKKV DERRETPVRR 600 GGGGGGSKEE GSPSKRGRPP KRGGRETAQE KRVRENSEKQ DDSAKRPKKR SRR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 644 | 652 | KRPKKRSRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009602840.1 | 0.0 | PREDICTED: bromodomain-containing protein DDB_G0270170 | ||||
TrEMBL | A0A1S4CHY2 | 0.0 | A0A1S4CHY2_TOBAC; bromodomain-containing protein DDB_G0270170-like | ||||
STRING | XP_009602840.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4268 | 21 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44430.1 | 4e-76 | DNA-binding bromodomain-containing protein |