PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00498g00537.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 493aa    MW: 56710.7 Da    PI: 10.0655
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00498g00537.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.1e-103159331
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
                       HLH  3 rahnerErrRRdriNsafeeLrellPkas 31
                              ++h + ErrRR+++N+ f++Lr+llP+a 
  Peaxi162Scf00498g00537.1 31 VNHMISERRRREKLNDNFQQLRSLLPPAL 59
                              57999*********************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.39E-62658No hitNo description
PROSITE profilePS508888.8292881IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.39E-92856IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-73178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-83258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-8152185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.39E-9152186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF561763.47E-7221256IPR016166FAD-binding, type 2
SuperFamilySSF551033.66E-36288435IPR016164FAD-linked oxidase-like, C-terminal
PfamPF092652.9E-51289433IPR015345Cytokinin dehydrogenase 1, FAD/cytokinin binding domain
Gene3DG3DSA:3.40.462.104.7E-55289432IPR016170Vanillyl-alcohol oxidase/Cytokinin dehydrogenase C-terminal domain
SuperFamilySSF551036.54E-12431489IPR016164FAD-linked oxidase-like, C-terminal
Gene3DG3DSA:3.40.462.101.7E-21433493IPR016170Vanillyl-alcohol oxidase/Cytokinin dehydrogenase C-terminal domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009690Biological Processcytokinin metabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0016614Molecular Functionoxidoreductase activity, acting on CH-OH group of donors
GO:0019139Molecular Functioncytokinin dehydrogenase activity
GO:0046983Molecular Functionprotein dimerization activity
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MFRRSIIFFR NINMIRRREH IQMNCPTSTQ VNHMISERRR REKLNDNFQQ LRSLLPPALL  60
IINQFIVLYR LRTEANYSAE GQSISSCYNN RVHKFFESSS GRIRKKDEIL EAQLLTQHGD  120
ASFSSDESGR LAVHITNIIS ESISGARIVD LQVIVREQCS ILDLVINLLE FLKNVNNVSL  180
ESVQTNTRNV QSDSVTLITL RLRIQVHSWI TYYCNINDQR TSKGELVTCS KHMNSELFFA  240
VLGGLGQFGI ITRARIVIDK APTRVSIITK DFNFKICSTF LLFLETVYVK WVRILYADFS  300
KFTKDQEHLI SIDGLDYVEG SLMMKQSPLN NWRSSFFSPS NQTKIASLLS ENGIIYCLEM  360
VKSHVPNNEL KKLLKGLNNL PGFIFKKDAT FVDFLNRVRS GEIELQSKGL WDVPHPWLNL  420
FVPKSSIMDF NAALQSKGQW DVPHPWLNLF VPKSSIMDFN AAVFVDIILK QNMPAGPILV  480
YPKSRKKYSK KLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4o95_A2e-62218493186420Cytokinin dehydrogenase 4
4oal_A2e-62218493186420Cytokinin dehydrogenase 4
4oal_B2e-62218493186420Cytokinin dehydrogenase 4
5hhz_A2e-62218493186420Cytokinin dehydrogenase 4
5hmr_A2e-62218493186420Cytokinin dehydrogenase 4
5hqx_A2e-62218493186420Cytokinin dehydrogenase 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13641ERRRRE
23742RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5880400.0AB588040.1 Petunia x hybrida PhCKX2 mRNA for cytokinin oxidase, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793978.11e-118PREDICTED: cytokinin dehydrogenase 3
TrEMBLF8WLS11e-117F8WLS1_PETHY; Cytokinin oxidase
STRINGXP_009793978.11e-117(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45672339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.15e-20bHLH family protein