PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00428g00055.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

C2H2

Protein Properties

Length: 327aa MW: 36569 Da PI: 8.2491

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00428g00055.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	163	182	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ Peaxi162Scf00428g00055.1 163 FSCHLCFKTFNRYNNLQMHM 182 89*****************9 PP
2	zf-C2H2	15.7	4.2e-05	247	269	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ Peaxi162Scf00428g00055.1 247 FMCRKCGKPFAVKGDWRTHEKNC 269 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.88E-5	155	185	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.7E-4	158	185	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.076	163	190	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	165	185	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.12E-6	231	267	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.8E-5	243	267	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
WFNFIPLHQQ YLSSSSSSSS SNFYYNNSNN SKYQQEIAPP PSSPPLKEAL PLLNNLTLVK 60 EEEYEFAIYK GKYSSCESTA AFSSSTTEED NENNVSVSLH IGLPSPSSDL TSSKVSFSCG 120 GVIEDSGGNK EFDVLSGYPL SGLHKGQYWI PTPSQILTGP TQFSCHLCFK TFNRYNNLQM 180 HMWGHGSQYR KGPESLRGTQ PSAMLKLPCY CCAPGCKHNI DHPRARPLKD FRTLQTHYKR 240 KHGVKPFMCR KCGKPFAVKG DWRTHEKNCG KIWYCICGSD FKHKRSLKDH IKSFGRGHGA 300 VGVPNLDELE DESTSDIEQD IGSSSPV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	1e-143	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019267064.1	1e-172	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-119	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A314KZL9	1e-171	A0A314KZL9_NICAT; Zinc finger protein wip2
STRING	XP_009763748.1	1e-168	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA462	24	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-116	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]