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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00386g00415.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 1108aa MW: 124164 Da PI: 9.1409 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.9 | 1e-07 | 67 | 100 | 3 | 38 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 W++e+ ++++a +++G++ Wk++a+ + Rt+ Peaxi162Scf00386g00415.1 67 EWSEEDLTRFYQAYRKYGKD-WKKVAAAVK-PRTAD 100 7*****************99.******998.78875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.42E-9 | 63 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-4 | 64 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.39E-5 | 67 | 102 | No hit | No description |
Pfam | PF00249 | 1.8E-6 | 67 | 102 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-4 | 67 | 103 | IPR009057 | Homeodomain-like |
Pfam | PF06584 | 9.6E-33 | 654 | 754 | IPR033471 | DIRP domain |
SMART | SM01135 | 3.8E-57 | 654 | 755 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1108 aa Download sequence Send to blast |
LTLCLPDSAF CYRFPKILSM APAKKSRSVN KRFSPTTDIS PSKDGNGDSS KKSLQRKRKL 60 SDMLGSEWSE EDLTRFYQAY RKYGKDWKKV AAAVKPRTAD MVEALYTMNR AYLSLPEGTA 120 SVVGLIAMMT DHYCNLAASD SEQESNEDAG TSRKPQKRAR GKVQPNISRT SEMASPTLAA 180 SNGCLTFLKK KRSGGSRPRA VGKRTPRFPV SFSYENPRSE KYFAPSRQSL KQQEDDTDDD 240 VKIALVLTEA SQRGGSPQVS HTPNRRTDSA MSSPVGTGER KRVKKHVDYA KLLSNEVDEE 300 EGSMEADTGE LSRYKNDLEE TGAAGRTTQK GRRLYGKKVE VDDSSDNHFD DIKEACSGTE 360 EGQRLGVVRG KLDMEATDEK NSRTSLQGTR KRSKKVLFRR DEGSAFDALQ TLADLSLMMP 420 TAENEDEAMI QVKDEIDDHV DESGSLEAVR ANRQRDKRGS AGVRSRWSQP LSKFEVASSS 480 TLKHGKVTST DVSAFPEPKQ VRRTQKTMSS KTRKTEGHIN NDVTESQEAE PKEALKKSTN 540 KGKRSSQSAS PKLIKDQEHS SCGDPRTERS DSAQSTAEIP VANQVNLPTK VRSRRKMDLE 600 KPQRQKDLKI SDKSLDDTSA YISALHDRTF SPKKKISNCL SNRHVRRRCT YEWFYSAIDY 660 PWFAKREFVE YLYHVGLGHV PRLTRVEWGV IRSSLGKPRR FSEQFLNEEK EKLNQYRESV 720 RTHYTELREG TREGLPTDLA RPLSVGQRVI AIHPKTREIH DGSVLTVDHS RCRVQFDRPE 780 LGVEFVMDID CMPLNPYENM PTLLTRHADT VDKFFESFNE QKVKALANEY IKFPAGDMDN 840 GDVCFSPPSH SISNLLKQTK VASAEADMQS KSGVMGTATY QQKAYTKPSV VVQIQAKEAD 900 VQALADLTRA LDKKVSSALL RLRQRNTYTG SIPLPWPRPV PNLADPSTLS TVDHCTSQPH 960 ESGFLVNEII ESSKIKARTM VDAAVQAMLS LTSRDNTTEK IEEAIDYVND RIPLDDSCMP 1020 TPPDPKSKTM SDRNETEIPS ELITKCVATL LMIQKCTERQ FPPADMAKVL DSAVASLQPC 1080 CSQNFPVYAE IQKCMGIIRN QILALIPT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-115 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009595580.1 | 0.0 | PREDICTED: protein ALWAYS EARLY 3 isoform X1 | ||||
Refseq | XP_009595581.1 | 0.0 | PREDICTED: protein ALWAYS EARLY 3 isoform X1 | ||||
Refseq | XP_018624867.1 | 0.0 | PREDICTED: protein ALWAYS EARLY 3 isoform X1 | ||||
Swissprot | Q6A332 | 0.0 | ALY3_ARATH; Protein ALWAYS EARLY 3 | ||||
TrEMBL | A0A1S3X518 | 0.0 | A0A1S3X518_TOBAC; protein ALWAYS EARLY 3-like isoform X1 | ||||
STRING | XP_009595580.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3312 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |
Publications ? help Back to Top | |||
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