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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00380g00219.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | NAC | ||||||||
Protein Properties | Length: 424aa MW: 47455.8 Da PI: 5.1313 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 84.9 | 1.5e-26 | 56 | 184 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....s 80 lp+G++F+P+d+e++++ L k g++ + +i+e+ ++++ k++ + +fF+++ k+y+tg+rk+r+++ + Peaxi162Scf00380g00219.1 56 LPRGVKFDPSDQEIIWHLLGKVGVGEQKPH-PFIDEFIPTNTHFVGV----KQDGSVSHFFHRAIKAYNTGTRKRRKIHgdnfgD 135 799************776666555555444.6788877777766655....4567788******************865555558 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tg++k+v+ +g + g+kk++v+y ++ k+ekt+Wvmh+y+l Peaxi162Scf00380g00219.1 136 VRWHKTGRTKPVIL-GGIQRGCKKIMVLYvsPAKGGKPEKTNWVMHQYHL 184 88************.**************6533555666*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-34 | 42 | 203 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.312 | 56 | 203 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-13 | 57 | 184 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MAKPSWLVDG KRIATKIKSA SGDPATVNWK SNPTKACPKC QFIVDNSDVS HHWPGLPRGV 60 KFDPSDQEII WHLLGKVGVG EQKPHPFIDE FIPTNTHFVG VKQDGSVSHF FHRAIKAYNT 120 GTRKRRKIHG DNFGDVRWHK TGRTKPVILG GIQRGCKKIM VLYVSPAKGG KPEKTNWVMH 180 QYHLGTGEDE MEGEYVVSKV FYQQQQVKQG EKIVQEFPED SECLVAKVDP HTPKSATPEP 240 PRSERRSSSM DAGQQIAAPS ISPTTQYHEV DYIEDEMIVP PEQTDSQNQI IENQVDETGT 300 NVETETGDDP KWWDSESQYL LDSQQLVEGL SLCDDLLASQ SPDRDGSEND KQKCKPRLAD 360 YAQLGPEDLK KDLEECQNLA LDPANIDLDT PPDFRLSQLE FGSQDSYIAW GGNKFGFDSG 420 EHAG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-173 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016434052.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like isoform X2 | ||||
Swissprot | Q6NQK2 | 1e-163 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A1S3X2C7 | 0.0 | A0A1S3X2C7_TOBAC; NAC domain-containing protein 8-like isoform X2 | ||||
STRING | XP_009614314.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8162 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-161 | NAC family protein |