PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00267g00059.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HD-ZIP
Protein Properties Length: 874aa    MW: 95685.1 Da    PI: 6.1783
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00267g00059.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-182785357
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                              k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Peaxi162Scf00267g00059.1 27 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 85
                              6789*****************************************************97 PP
2START151.66.7e-481754022204
                               HHHHHHHHHHHHHHHC-TT-EEEE....................EXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHC CS
                     START   2 laeeaaqelvkkalaeepgWvkss....................esengdevlqkfeeskvdsgealrasgvvdmvlallveell 66 
                               +aee+++e++ ka+ ++  Wv++                      s +g++++ +++ s+++sg a+ra+g+v  +++  v+e+l
  Peaxi162Scf00267g00059.1 175 IAEETLAEFLGKATGTAVDWVQMIgmkaslfavcaslvselpfmCSIPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEIL 258
                               6899999****************99888888888888877777777788888888888888*****************.888888 PP

                               CCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE- CS
                     START  67 ddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRa 145
                               +d++ W ++++   +l vi +g  g+++l++ +++a+++l++ Rdf+++Ry+  l++g++vi+++S++s +  p+     s+vRa
  Peaxi162Scf00267g00059.1 259 KDRPSWYRDCRCLNILSVIPTGngGTIELIYLQTYAPTTLASaRDFWTLRYTTNLEDGSLVICERSLTSATGGPSgppATSFVRA 343
                               8888*******************************************************************99999999****** PP

                               EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                     START 146 ellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                               e+lpSg+li+p+++g+s +++v+h+dl++++++++lr+l++s+ + ++k+++a l++ +
  Peaxi162Scf00267g00059.1 344 EMLPSGYLIRPCDGGGSMIHIVDHIDLDAWSVPEVLRPLYESSKILAQKMTMAGLRHIR 402
                               ******************************************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-19885IPR009057Homeodomain-like
PROSITE profilePS5007115.7912286IPR001356Homeobox domain
SMARTSM003891.5E-152490IPR001356Homeobox domain
SuperFamilySSF466892.65E-162788IPR009057Homeodomain-like
CDDcd000861.20E-162787No hitNo description
PfamPF000463.7E-162785IPR001356Homeobox domain
CDDcd146862.00E-579118No hitNo description
PROSITE profilePS5084825.584165386IPR002913START domain
CDDcd088758.70E-66169405No hitNo description
SMARTSM002346.2E-41174404IPR002913START domain
PfamPF018525.4E-45175402IPR002913START domain
SuperFamilySSF559613.57E-33176406No hitNo description
Gene3DG3DSA:3.30.530.203.3E-23233399IPR023393START-like domain
PfamPF086701.3E-47729873IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    Send to blast
MALCIHRESN SGGSSSGKNN NQMDNSKYVR YTPEQVEALE RVYAECPKPS SLRRQQLIRE  60
CPILSNIEPK QIKVWFQNRR CREKQRKESS RLTTVNRKLT AMNKLLMEEN DRLQKQVSQL  120
VYENGYMKQQ LHTVSSTTTD TSCESVVVSG QQQRKNPTPQ HPERDANNPA GLLAIAEETL  180
AEFLGKATGT AVDWVQMIGM KASLFAVCAS LVSELPFMCS IPGPDSIGIV AVSRNCSGVA  240
ARACGLVSLE PTKVAEILKD RPSWYRDCRC LNILSVIPTG NGGTIELIYL QTYAPTTLAS  300
ARDFWTLRYT TNLEDGSLVI CERSLTSATG GPSGPPATSF VRAEMLPSGY LIRPCDGGGS  360
MIHIVDHIDL DAWSVPEVLR PLYESSKILA QKMTMAGLRH IRQIAQETSG EIQYTGGRQP  420
AVLRALSQRL CRGFNDAVNG FVDDGWTIMD SDGVEDITIA INSSSSKFLG SQYNSLSILP  480
TFGGVLCARA SMLLQNVPPA LLVRFLREHR SEWADYGVDA YSAASLKASP YAVPCARPGG  540
FPSSQVILPL AQTVEHEEFL EVVRLEGPAF SPEDIALSRD MYLLQLCSGV DENAAGACAQ  600
LVFAPIDESF GDDAPLLPSG FRVIPLEPKS DGPAATRTLD LASTLEAGTG GTRPAGEIEA  660
NNYNHRSVLT IAFQFTFESH YRDNVAAMAR QYVRSIVGSV QRVAMAIAPS RLTSQLTPKP  720
FPGSPEAVTL ARWISRSYRV HTGGDLLQVD SQAGDAILKQ LWHHNDAIMC CSVKMNASAV  780
FTFANQAGLD MLETTLLALQ DIMLDKILDE AGRKVLLSEF SKIMQQGFAY LPAGICVSSM  840
GRPVSYEQAV AWKVLNDEDS NHCLAFMFIN WSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5603200.0AY560320.1 Nicotiana sylvestris PHAVOLUTA-like HD-ZIPIII protein mRNA, complete cds.
GenBankJQ6869320.0JQ686932.1 Nicotiana tabacum cultivar SR1 PHV HD-ZIPIII (PHV) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612341.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like isoform X1
RefseqXP_016501663.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like isoform X1
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A1S4CKE40.0A0A1S4CKE4_TOBAC; homeobox-leucine zipper protein ATHB-14-like isoform X1
STRINGXP_009612341.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]