PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00221g00015.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HSF
Protein Properties Length: 360aa    MW: 41840.6 Da    PI: 7.1355
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00221g00015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.13.3e-34561472102
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Flkk++e+++d++++++isws+++ sfvv+d+++f+ ++Lpk+Fkh+nf+SF+RQLn+Y F+k+++++         weF+++ F
  Peaxi162Scf00221g00015.1  56 FLKKTFEMVDDPNTDSIISWSSTKASFVVWDPHKFSIDLLPKHFKHNNFSSFIRQLNTYRFRKIDSDR---------WEFANEGF 131
                               9********************999*****************************************999.........******** PP

                               XXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkks 102
                               +kgkk+ll++ikr+k+
  Peaxi162Scf00221g00015.1 132 QKGKKHLLRNIKRRKQ 147
                               **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.81E-3452145IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-5452145IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-3752145IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.1E-185679IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.5E-3156145IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.1E-1894106IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434095119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.1E-18107119IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MSDQKTIVID EGNEGVVAVK EEFIDEDGTI NASGEMFTSE LPKPLEGLRD VGPPPFLKKT  60
FEMVDDPNTD SIISWSSTKA SFVVWDPHKF SIDLLPKHFK HNNFSSFIRQ LNTYRFRKID  120
SDRWEFANEG FQKGKKHLLR NIKRRKQLYP QNVQQGGSAQ SWLGSCKDGI QAELEKLKKD  180
QKTLKMDVLR LKQQQESTES YLATVKERLR SSETRQKYMV IFMAKAFKNP LFVQHFIEKM  240
KRRRTLDNTV SKKRRLACET MGKDDGISLQ IQEEFTTIKS EIQTLFSSDE TSSPVEQQKT  300
KFSSGTNSPD MLPENYILWE KLMEDDMIYE NGVETDKHQS EIVLELEDLI AKPPEWKCMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-225414527129Heat shock factor protein 1
5d5v_B1e-225414527129Heat shock factor protein 1
5d5v_D1e-225414527129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240254KRRRTLDNTVSKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580278.10.0PREDICTED: heat stress transcription factor A-2-like
TrEMBLA0A1U8HGJ70.0A0A1U8HGJ7_CAPAN; heat stress transcription factor A-2-like
STRINGXP_009606363.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56812235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.17e-88heat shock transcription factor A2