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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Peaxi162Scf00130g00423.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family |
MIKC_MADS |
Protein Properties |
Length: 230aa MW: 26076 Da PI: 7.5089 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Peaxi162Scf00130g00423.1 | genome | SGN | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 86.7 | 1.3e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien+ rqvtfskRr+g+lKKA+EL +LCdaev vi+fs+tgklye++s
Peaxi162Scf00130g00423.1 9 KKIENTNSRQVTFSKRRQGLLKKAKELAILCDAEVGVIVFSNTGKLYEFAS 59
68***********************************************86 PP
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2 | K-box | 67.4 | 4.7e-23 | 84 | 174 | 10 | 100 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94
+a+ +q e++ Lk+e+ +L++ qR+l+G++Le L++keLqqLe+qL +++ +++kK+++l eq+e++ ke+++ en+ L
Peaxi162Scf00130g00423.1 84 VAAEKHGSQPEVNALKAEVVTLRQLQRRLMGKELEGLNFKELQQLEHQLTEGMLAVKDKKEQVLWEQLEKSLLKEEKVLLENQVL 168
4555667999*************************************************************************** PP
K-box 95 rkklee 100
r++++e
Peaxi162Scf00130g00423.1 169 REEIDE 174
***986 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.7E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.113 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.79E-42 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 6.02E-32 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.76 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.2E-16 | 90 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 230 aa
Download sequence Send
to blast |
MGRGRIEIKK IENTNSRQVT FSKRRQGLLK KAKELAILCD AEVGVIVFSN TGKLYEFASS 60 SMEHILARYD KAPESSELTT IETVAAEKHG SQPEVNALKA EVVTLRQLQR RLMGKELEGL 120 NFKELQQLEH QLTEGMLAVK DKKEQVLWEQ LEKSLLKEEK VLLENQVLRE EIDELRRSSK 180 NSHESGLALM KNPVCDSDTC LRLGLPVDTS QKKMIIPKME STSNDAQNPM
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