PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00130g00423.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26076 Da    PI: 7.5089
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00130g00423.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.71.3e-27959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              k+ien+  rqvtfskRr+g+lKKA+EL +LCdaev vi+fs+tgklye++s
  Peaxi162Scf00130g00423.1  9 KKIENTNSRQVTFSKRRQGLLKKAKELAILCDAEVGVIVFSNTGKLYEFAS 59
                              68***********************************************86 PP

2K-box67.44.7e-238417410100
                     K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                                +a+   +q e++ Lk+e+ +L++ qR+l+G++Le L++keLqqLe+qL +++  +++kK+++l eq+e++  ke+++  en+ L
  Peaxi162Scf00130g00423.1  84 VAAEKHGSQPEVNALKAEVVTLRQLQRRLMGKELEGLNFKELQQLEHQLTEGMLAVKDKKEQVLWEQLEKSLLKEEKVLLENQVL 168
                               4555667999*************************************************************************** PP

                     K-box  95 rkklee 100
                               r++++e
  Peaxi162Scf00130g00423.1 169 REEIDE 174
                               ***986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.113161IPR002100Transcription factor, MADS-box
CDDcd002652.79E-42277No hitNo description
SuperFamilySSF554556.02E-32277IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.7688178IPR002487Transcription factor, K-box
PfamPF014862.2E-1690172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGRGRIEIKK IENTNSRQVT FSKRRQGLLK KAKELAILCD AEVGVIVFSN TGKLYEFASS  60
SMEHILARYD KAPESSELTT IETVAAEKHG SQPEVNALKA EVVTLRQLQR RLMGKELEGL  120
NFKELQQLEH QLTEGMLAVK DKKEQVLWEQ LEKSLLKEEK VLLENQVLRE EIDELRRSSK  180
NSHESGLALM KNPVCDSDTC LRLGLPVDTS QKKMIIPKME STSNDAQNPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-21180180MEF2C
5f28_B8e-21180180MEF2C
5f28_C8e-21180180MEF2C
5f28_D8e-21180180MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508650.11e-128PREDICTED: MADS-box transcription factor 23-like
TrEMBLA0A1S4D5E61e-127A0A1S4D5E6_TOBAC; MADS-box transcription factor 23-like
STRINGXP_009758657.11e-127(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.16e-50AGAMOUS-like 15