PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00115g01316.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | TALE | ||||||||
Protein Properties | Length: 587aa MW: 65071.5 Da PI: 7.2321 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 1.9e-09 | 381 | 413 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +++ LA+++gLt +qV++WF N R + Peaxi162Scf00115g01316.1 381 HPYPTDSDKHMLATQTGLTRNQVSNWFINARVR 413 89*****************************87 PP | |||||||
2 | BELL | 101.1 | 8.1e-33 | 235 | 300 | 7 | 72 |
BELL 7 kkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +kkakL+ +++e++krYkqy++q+q+v+ssFe+vagl +a+pY+s Alk++S+hFr+L++ai++++ Peaxi162Scf00115g01316.1 235 QKKAKLIYMQDEICKRYKQYHQQMQMVVSSFETVAGLSAATPYISQALKTVSQHFRSLRNAISDHL 300 79************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07526 | 6.6E-36 | 150 | 297 | IPR006563 | POX domain |
SMART | SM00574 | 8.7E-31 | 163 | 298 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.823 | 354 | 417 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.61E-11 | 357 | 418 | No hit | No description |
SMART | SM00389 | 6.2E-9 | 357 | 421 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-17 | 359 | 423 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-28 | 360 | 421 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.5E-18 | 374 | 413 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 587 aa Download sequence Send to blast |
MSDQTSEFHV AQHSRRERLR INEIFQPYQH TTNISYDPSL VLSPEMLNFA TNTESMLVPM 60 SHSAVSNHVN RTSDGVTQNF GTWRSVNLQQ EASCNWKNVA NYNSSGGIES NLSSPLFDGG 120 EGNLSGSLNL NNASTIDVKP INYFGYQDMQ PTQQLLDELC NLTAGSNAIK SCNFSKNVRD 180 GVRVSCDVNA AESSSGAVGD SGGSSSSFYS TKVQKQECGG LRSSTESNVR PDYLQKKAKL 240 IYMQDEICKR YKQYHQQMQM VVSSFETVAG LSAATPYISQ ALKTVSQHFR SLRNAISDHL 300 KNIRQALGED LPSPAATGMS RGDGTSSRSN FVEQMLHNQK AAGGAGVAFI ESQQHVWRPQ 360 RGLPERAVAI LRAWLFDHFL HPYPTDSDKH MLATQTGLTR NQVSNWFINA RVRVWKPMVE 420 EIHMLESKVV GETGSSVRQS DHGKLVSEQS NHVINDGLHR SNISISNFGG QHFNGVVNNM 480 RGGMLEKQDN CLGIGPSERL DNEDLWKNQE KRSKLECHIP ATIGDGSFMG FVPYQRNGLE 540 IGGIGAVSLT LGLRQSAEAA QQQQQMQLHE HRLRQQFGGQ MIHDFVD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 3e-16 | 363 | 420 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 3e-16 | 363 | 420 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009615825.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A1S4C0W7 | 0.0 | A0A1S4C0W7_TOBAC; uncharacterized protein LOC107813887 | ||||
STRING | XP_009615825.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8720 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27990.1 | 5e-75 | BEL1-like homeodomain 8 |