PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00102g00626.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NAC
Protein Properties Length: 309aa    MW: 34844.7 Da    PI: 5.0449
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00102g00626.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1713.7e-5361331128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                               lppGfrFhPtd+elv +yLk+k++g ++el evi+ +d+yk++Pw+Lp k  + +++ ew+fF++rdkky++g+r+nratksgyW
  Peaxi162Scf00102g00626.1   6 LPPGFRFHPTDDELVGYYLKRKTDGLEIEL-EVIPVIDLYKFDPWELPeKsFLPNRDMEWFFFCPRDKKYPNGSRTNRATKSGYW 89 
                               79****************************.99**************95334556888*************************** PP

                       NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               katgkd++v++ + ++vg +ktLvfy+grap g +t+Wvmheyrl
  Peaxi162Scf00102g00626.1  90 KATGKDRKVTC-QPAVVGYRKTLVFYRGRAPLGDRTNWVMHEYRL 133
                               ***********.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-624156IPR003441NAC domain
PROSITE profilePS5100557.8566156IPR003441NAC domain
PfamPF023655.9E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGGASLPPGF RFHPTDDELV GYYLKRKTDG LEIELEVIPV IDLYKFDPWE LPEKSFLPNR  60
DMEWFFFCPR DKKYPNGSRT NRATKSGYWK ATGKDRKVTC QPAVVGYRKT LVFYRGRAPL  120
GDRTNWVMHE YRLCDDVSQG TPNFQGPFAL CRIIKRNDAS VKTNDTSVAV SNEPVVLTTD  180
TPTQTTYTCN DSNYSTPITS PYHTSHMGGY ESAEGTSAAN LWMSPDMILD SSKECPQGQN  240
AHEYNPQYDI PNMTSLQPSD QFEFTSSSSF PNFRGEVELS GELSSYGCGS PYSVHGSYMG  300
FYDNMSYEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-54516216171NO APICAL MERISTEM PROTEIN
1ut4_B6e-54516216171NO APICAL MERISTEM PROTEIN
1ut7_A6e-54516216171NO APICAL MERISTEM PROTEIN
1ut7_B6e-54516216171NO APICAL MERISTEM PROTEIN
4dul_A6e-54516216171NAC domain-containing protein 19
4dul_B6e-54516216171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019225482.10.0PREDICTED: NAC domain-containing protein 86-like
SwissprotO496971e-103NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A314KV400.0A0A314KV40_NICAT; Nac domain-containing protein 86
STRINGXP_009760809.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62561635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-105NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]