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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Peaxi162Scf00083g01812.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family |
MIKC_MADS |
Protein Properties |
Length: 225aa MW: 26034.7 Da PI: 10.0412 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Peaxi162Scf00083g01812.1 | genome | SGN | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 87.9 | 5.4e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien++nrqvt+skRrng++KKA+EL vLCda++++i++sst k++ey s
Peaxi162Scf00083g01812.1 9 KKIENSTNRQVTYSKRRNGLFKKAKELTVLCDAKICLIMLSSTRKFHEYTS 59
68***********************************************75 PP
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2 | K-box | 83.4 | 4.9e-28 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85
yq++ g++ +++++e++q++l++Lk+ +++L+re+R++ Ged++ L+l+eL +L+ ++ +sl +iR++K++++++q+++ +k+ +
Peaxi162Scf00083g01812.1 71 YQRTLGVDIWSKHYEKMQENLNRLKDINNKLRREIRQRTGEDMSGLNLQELCHLQGNISDSLAEIRERKYHVIKTQTDTCRKRVR 155
67788899***************************************************************************** PP
K-box 86 elqeenkaLrkkle 99
+l+e++ +L + le
Peaxi162Scf00083g01812.1 156 NLEEQHGSLVHDLE 169
********998876 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.2E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.553 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.50E-37 | 2 | 80 | No hit | No description |
SuperFamily | SSF55455 | 3.66E-36 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.8E-20 | 82 | 168 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.804 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 225 aa
Download sequence Send
to blast |
MGRGKIEIKK IENSTNRQVT YSKRRNGLFK KAKELTVLCD AKICLIMLSS TRKFHEYTSP 60 NTTTKKMIDL YQRTLGVDIW SKHYEKMQEN LNRLKDINNK LRREIRQRTG EDMSGLNLQE 120 LCHLQGNISD SLAEIRERKY HVIKTQTDTC RKRVRNLEEQ HGSLVHDLEA KSEDPTYGVV 180 ENEGHFNSAM AFANGVHNLY AFRLQTLHPN LQNGGGFGSR DLRLA
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF230704 | 0.0 | AF230704.1 Petunia x hybrida MADS box transcription factor TM6 mRNA, partial cds. |