PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00036g00820.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HSF
Protein Properties Length: 314aa    MW: 35815.4 Da    PI: 6.3425
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00036g00820.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind989.2e-31251152101
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+klye++ed+e+++li+w++++ +fv++d++ f  +vLp+yFkhsn++SF+ QLn YgF+k+++ +          e+++++F
  Peaxi162Scf00036g00820.1  25 FLSKLYEMVEDPETDDLIRWTTTKAAFVITDPNMFCVQVLPNYFKHSNLSSFIYQLNNYGFRKISSYR---------SEYENPWF 100
                               9*********************99******************************************99.........57****** PP

                               XXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkk 101
                               + gkk+ l++ik + 
  Peaxi162Scf00036g00820.1 101 QGGKKHWLKNIKSRI 115
                               ************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-3118109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-4021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.1E-3021113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.0E-172548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-2725113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-176375IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-177688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MNQENGGGIV RRRASRLRGV APPPFLSKLY EMVEDPETDD LIRWTTTKAA FVITDPNMFC  60
VQVLPNYFKH SNLSSFIYQL NNYGFRKISS YRSEYENPWF QGGKKHWLKN IKSRIQLSKA  120
DKAQGSSGSP TVDILKDNLE EKLENLKSDH ISLKIELQEL KEKQEKMRIQ FPTMLGLKLF  180
LEDFKVRGES SSNDIRKKPR LEESQDGVAG TCQDGIRKTS NSAGGSVSSN EEQKEEATAR  240
NEKNREFWKK LFDDDSESEN GGSEAQKELN RSKALVEIEK MVENKIAMEG EALIAKVATA  300
GLQDEMETYL QLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-212311527130Heat shock factor protein 1
5d5v_B3e-212311527130Heat shock factor protein 1
5d5v_D3e-212311527130Heat shock factor protein 1
5d8k_B2e-21231193110Heat shock factor protein 2
5d8l_B2e-21231193110Heat shock factor protein 2
5d8l_D2e-21231193110Heat shock factor protein 2
5d8l_F2e-21231193110Heat shock factor protein 2
5d8l_H2e-21231193110Heat shock factor protein 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169233.11e-149PREDICTED: heat stress transcription factor A-7a-like
TrEMBLM1CRG31e-147M1CRG3_SOLTU; Uncharacterized protein
STRINGXP_009620920.11e-151(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129701518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-34heat shock transcription factor A2