PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00028g00036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | bHLH | ||||||||
Protein Properties | Length: 420aa MW: 47188.8 Da PI: 7.1992 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.7 | 5e-14 | 233 | 278 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR++iN++f++Lr+llP+ +K +Ka++L + eY++sL Peaxi162Scf00028g00036.1 233 HHMISERKRREKINESFQQLRSLLPPG-----TKKDKASVLASTAEYLSSL 278 68899********************97.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.15E-13 | 229 | 283 | No hit | No description |
PROSITE profile | PS50888 | 15.878 | 229 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-18 | 231 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-16 | 233 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-11 | 233 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.1E-15 | 235 | 284 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MDSLFFLEKG DRTAFLVQMM ESFGCTYICL WQYFQPSNCL MSLDGIYQGE NEVARRLFEE 60 YRHSWLIMYN GRVPGLAIKN STPYIELPLA DLQSLASIPV QLQFYLEAGI KVSLETVVMN 120 LFREDFTRQA AATVAGGLPQ SIMPKNEDDA ITRAYLAVIS SHSSSSSSSS REIVTQKTSS 180 FRRYFGGPNV QLTARSRSEN MLKRSIIFYR NLNMIMRRQE QIQANRFTST QVHHMISERK 240 RREKINESFQ QLRSLLPPGT KKDKASVLAS TAEYLSSLKV QVEELSKKNE MLEAQVILTQ 300 RQPTEPEQLV EAGSSGGTGI GKSLHVQVTH VTESTSEATI VDLQVSVRGE SSILLDMVLR 360 LLDFLKTLNN VSIESVEANS RNTQPAGPVN HITLRLKIQD GELDETAFQE AVKRVVGDSA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 237 | 242 | ERKRRE |
2 | 238 | 243 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016506510.1 | 1e-92 | PREDICTED: putative transcription factor bHLH041 | ||||
STRING | XP_009624851.1 | 1e-90 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4567 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 1e-40 | bHLH family protein |