PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

MIKC_MADS

Protein Properties

Length: 207aa MW: 24186.8 Da PI: 10.3736

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00013g00725.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70.9	1.1e-22	9	44	1	36
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaeva 36 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva Peaxi162Scf00013g00725.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVA 44 79*********************************7 PP
2	K-box	86.1	7.3e-29	65	134	31	100
K-box 31 LqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 L Rh++GedL+sLs+keLq+LeqqL++slk+iRs+Kn+l++e+i+elqkk k+lqe+n+ L+kk++e Peaxi162Scf00013g00725.1 65 LIIAPRHYMGEDLDSLSMKELQNLEQQLDSSLKHIRSRKNQLMHESISELQKKDKSLQEQNNLLSKKVKE 134 55667**************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.2E-24	1	55	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.469	1	44	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.8E-21	1	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-20	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-18	10	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-20	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-20	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	14.757	48	138	IPR002487	Transcription factor, K-box
Pfam	PF01486	2.0E-24	58	132	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MGRGRVQMKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVAWRGFLK DMKDTHMLRG 60 SLFLLIIAPR HYMGEDLDSL SMKELQNLEQ QLDSSLKHIR SRKNQLMHES ISELQKKDKS 120 LQEQNNLLSK KVKEREKELA QQTQWEQQNN HHEINSSSSF VLPQPLDSPH LGYTFHPSPI 180 ILCMMQGSIP EHSRQWRSRR SFTAATC

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF176782	1e-169	AF176782.1 Petunia x hybrida MADS box transcription factor (PFG) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027773500.1	2e-82	agamous-like MADS-box protein AGL8 homolog isoform X3
Swissprot	Q42429	3e-76	AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBL	Q9SBQ1	3e-89	Q9SBQ1_PETHY; MADS box transcription factor
STRING	PGSC0003DMT400010451	1e-74	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA499	23	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26310.1	5e-56	MIKC_MADS family protein

Publications ? help Back to Top
Kang SG,Hannapel DJ Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs. Gene, 1995. 166(2): p. 329-30 [PMID:8543185]