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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pbr041158.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family |
NAC |
Protein Properties |
Length: 726aa MW: 78690.8 Da PI: 6.4617 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pbr041158.1 | genome | CPETR | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 166.8 | 7.4e-52 | 36 | 163 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96
l+pGfrFhPtdeelv +yLk+kv +k++++ ++i+evdiyk+ePwdL k ++k++++e+yfFs d+ky +g r nrat++gyWkatg+d++v++ +
Pbr041158.1 36 LAPGFRFHPTDEELVIYYLKRKVCRKPFKF-NAISEVDIYKSEPWDLAdKsSLKSRDQEYYFFSALDRKYGNGARMNRATNQGYWKATGNDRAVKH-N 131
579**************************9.89**************75347888999**************************************.9 PP
NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128
+ +vg+kktLvf++grap+g++t+Wvmheyrl
Pbr041158.1 132 DINVGMKKTLVFHSGRAPDGKRTNWVMHEYRL 163
99****************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009555 | Biological Process | pollen development |
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
GO:0005730 | Cellular Component | nucleolus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 726 aa
Download sequence Send
to blast |
MGREADLQII PSAAAAVIAV AAPIDPPTPA PAPTALAPGF RFHPTDEELV IYYLKRKVCR 60 KPFKFNAISE VDIYKSEPWD LADKSSLKSR DQEYYFFSAL DRKYGNGARM NRATNQGYWK 120 ATGNDRAVKH NDINVGMKKT LVFHSGRAPD GKRTNWVMHE YRLVDEVFEK AGLGAIQDAF 180 VLCRVFHKSN IGPPNGHRYA PFVEEEWDDD DKLTLVPGQE TRSVAVVSRD AFVVGNGHAA 240 CSEQNDYAAR SEQKVHAARS EQKVHAARSE QNDYVARSEQ KVHAARSEQN DYVARSEQKV 300 HAARSEQNDY AAHSEQKVHA ARGEQNGHAA YIKGNGHATY IGGNGHAGYI GGNGHAAYIG 360 GNGHAAYIGG NGQAAYNGEN GHGTSVERNG HGISMEGIDH GTSVKGTGHG TEGNGHGTSV 420 KRYGHVTSVE GSGHVTSEGS GHVTSVEGNG QVTSVKGNGH GISVKGNVVE GIGHGTIIVV 480 DDNGTTNEGN CHETGTAGNG HSAPTAENNI EQDTQAISTA IVVVPELPTE NQTVLPPCKT 540 ERTDDYPMTC VVNREERLDD YPSPGPDDAQ PLLTLFNRQP GQLRQYKRRR HNESNSNHSN 600 ASEISSGMTH DPCSSTTTTA STEASMTTTT RNFLSALVEY QLLESLEPKD TTPAPPPELN 660 AALMESSVPT SCLKYIETLQ TEIHKISIER ETLKFEMMSA QAMINILQAR IDLLNKENED 720 LKRKV*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3swm_A | 1e-45 | 35 | 190 | 19 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-45 | 35 | 190 | 19 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-45 | 35 | 190 | 19 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-45 | 35 | 190 | 19 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-45 | 35 | 190 | 19 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-45 | 35 | 190 | 19 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-45 | 35 | 190 | 19 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-45 | 35 | 190 | 19 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
Publications
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- Higgins JD,Ferdous M,Osman K,Franklin FC
The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis. Plant J., 2011. 65(3): p. 492-502 [PMID:21265901] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Zhang S, et al.
C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov, 2019. [PMID:26617990] - Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T
sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation. Plant J., 2017. 90(3): p. 505-519 [PMID:28207953] - Elmayan T, et al.
Arabidopsis mutants impaired in cosuppression. Plant Cell, 1998. 10(10): p. 1747-58 [PMID:9761800]
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