PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr040074.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 232aa MW: 26775.9 Da PI: 7.0499 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.8 | 4.9e-20 | 34 | 86 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq+ Le+ Fe ++++ +++ +LA++lgL+ rqV +WFqNrRa++k Pbr040074.1 34 TRRFSDEQISLLESIFEADSKLEPRRKVQLARELGLQPRQVAIWFQNRRARWK 86 468*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 123.7 | 8.8e-40 | 33 | 124 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 + rr+s+eq++lLE+ Fe+++kLep+rKv+lareLglqprqva+WFqnrRAR+k+kq+E+dy++L++ yd+l+++ e+L++e+++L +l++ Pbr040074.1 33 NTRRFSDEQISLLESIFEADSKLEPRRKVQLARELGLQPRQVAIWFQNRRARWKSKQIEQDYRSLREDYDKLASRFESLKEEKQSLLMQLQK 124 579************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.77E-20 | 22 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.993 | 28 | 88 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-19 | 31 | 92 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.99E-16 | 32 | 89 | No hit | No description |
Pfam | PF00046 | 2.5E-17 | 34 | 86 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 34 | 95 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.3E-6 | 59 | 68 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 63 | 86 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.3E-6 | 68 | 84 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.6E-14 | 88 | 128 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MERRKEECYE EENLDYGIEP QSAMKRKKNK SKNTRRFSDE QISLLESIFE ADSKLEPRRK 60 VQLARELGLQ PRQVAIWFQN RRARWKSKQI EQDYRSLRED YDKLASRFES LKEEKQSLLM 120 QLQKLHDLVG TSRAGAPTED SLANQTADGS SYKDGNCKTT ARVRLEEALE KTGAIDKHTS 180 NDVGGEFGDE RHELLNIGQL DASVTPLGLH RLDSGNILFD RCNSHWLNFW T* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 35 | KRKKNKSKNTRR |
2 | 80 | 88 | RRARWKSKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr040074.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009361303.1 | 1e-171 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | D9ZJ09 | 1e-157 | D9ZJ09_MALDO; HD domain class transcription factor | ||||
STRING | XP_009361303.1 | 1e-171 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12005 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61890.1 | 2e-41 | homeobox 12 |