PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038730.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 803aa    MW: 88716.5 Da    PI: 6.0486
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038730.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.61.3e-07172224156
          AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  s ++GV+++   gr+ A I+d +e     k+   g f+ + +Aa+a++ a++kl+ge
  Pbr038730.1 172 SVFRGVSRHT-EGRFQAFIWDGTEpE---KKGKTGGFDKEGDAARAHDLAALKLWGE 224
                  689****998.8*********65533...5555588***66*************997 PP
2AP231.73.7e-10266314152
          AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkk 52 
                  s y+GV++ + +++W A++      g ++   +lg+f t+e+Aa+a++  + +
  Pbr038730.1 266 SNYRGVSRISGKKKWQARLGR----GkRHNGLYLGTFETEEQAARAYDIGAIR 314
                  57****************666....54459******************87766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.04E-15172231No hitNo description
SuperFamilySSF541712.68E-13172232IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.2E-13173232IPR001471AP2/ERF domain
PROSITE profilePS5103214.908173231IPR001471AP2/ERF domain
SMARTSM003803.9E-14173237IPR001471AP2/ERF domain
PRINTSPR003679.5E-6174185IPR001471AP2/ERF domain
PRINTSPR003679.5E-6213233IPR001471AP2/ERF domain
PfamPF008477.0E-6266309IPR001471AP2/ERF domain
CDDcd000189.20E-17266327No hitNo description
SuperFamilySSF541718.5E-13266327IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.5E-15267326IPR001471AP2/ERF domain
PROSITE profilePS5103216.133267325IPR001471AP2/ERF domain
SMARTSM003805.9E-17267331IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 803 aa     Download sequence    Send to blast
MNSSDSFCYS SPHSRRSTST VPKNSSYLGF VNDFDIHGSQ RYGLSPPVQK QSHFYVNVQN  60
EGFTNFHNNT SEAMQDNATM QPQSPSMLES ALFETPNYNS FSFLTNPFSS SLPLECDTGL  120
IGENYGKNNA VNIFGEPLMS IDEDNKGCTS PMNRQRRHPR QNSKHTICNK KSVFRGVSRH  180
TEGRFQAFIW DGTEPEKKGK TGGFDKEGDA ARAHDLAALK LWGESAKLNF PTEQYKKDLE  240
EMQTMTKQDY FLHIRRASPS FANGLSNYRG VSRISGKKKW QARLGRGKRH NGLYLGTFET  300
EEQAARAYDI GAIRTKGTDA ATNFDVSEND VNSILQSEKL PIGEGASKSL KFASSGDDFI  360
QSRRKTNKKT PFLQPYEDHR LGILNRISTQ PSSPFQQTTL QTLPIYPNNS NRSQYVDPFL  420
QDFQNTDNIQ NNQLLQYYSV NPRSQVQGVP AGYQNANFET NRIFSHWDGN TYGGGDNSVG  480
SAINIGPVIP SQNHELNQFQ YYNNDAYGQK LSQNPNSSCL NSHVSAYPQT INPTFLPGLN  540
NLHTCSSYIG ECSSSQAEVS LGTILGETDK SLGSDIVGEV VPVADLEVHV NPIERNSISV  600
LPKDRENRSA GYQNANFETN RIFSHWDGNT DGGGDNSVGS AINIGPVIPS QNHELNQFQY  660
YKNEAYGQKL SQNPNSSYLL QNSHVSAYPK TINSTFLPGL NNLHTCSSYI GECSSSQAEV  720
SLDTILGETD ESLGGDVVSE VVPVADLEVH VNPIERNSVL PGDRENGSVV EVSGVSKSGH  780
VLDNSSWKDL LLMSLNDPDC KL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038730.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498I3Y90.0A0A498I3Y9_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1650648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.14e-53AP2 family protein