PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038101.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 223aa    MW: 25466.2 Da    PI: 9.1211
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038101.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.11.6e-32143201159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK vk ++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg H+h+
  Pbr038101.1 143 LDDGYRWRKYGQKAVKANKFPRSYYRCTYEGCNVKKQVQRLSKDEGVVVTTYEGMHTHP 201
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-33128201IPR003657WRKY domain
SuperFamilySSF1182906.8E-29135202IPR003657WRKY domain
PROSITE profilePS5081129.769138203IPR003657WRKY domain
SMARTSM007743.4E-38143202IPR003657WRKY domain
PfamPF031061.8E-26144201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEKYQMFFPC SSSANYPNPN PTNTDHHHRV GSSHVYTNNF DGRVDQTSDA FLGLKSTMTT  60
ENHVGSSSDE VLVHKDGHPY QQYYQQHYPS ANAGMSNVIV GADQSSVDPH RANNNDSEKK  120
KKGEKKMKKP KYAFQTRSQV DILDDGYRWR KYGQKAVKAN KFPRSYYRCT YEGCNVKKQV  180
QRLSKDEGVV VTTYEGMHTH PIDKPSDNFE HILNQMQIYT PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-27133202776Probable WRKY transcription factor 4
2lex_A5e-27133202776Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038101.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009344948.11e-168PREDICTED: probable WRKY transcription factor 45
TrEMBLA0A498HID11e-135A0A498HID1_MALDO; Uncharacterized protein
STRINGXP_009344948.11e-168(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF115634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.12e-54WRKY DNA-binding protein 75