PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037485.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 843aa    MW: 92149.8 Da    PI: 6.0021
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037485.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-182482357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Pbr037485.1 24 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 82
                 6789*****************************************************97 PP
2START170.21.4e-531733792203
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  e+l  i  g  g+++l +++
  Pbr037485.1 173 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRRSWFRDCRCLEVLSLIPAGngGTIELVYMQ 269
                  68999*****************************************************.9999999999****************9999********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l++ Rdf+++Ry+ +l++g++v++++S++s +  p+   s+s+vRae+lpSg+li+p+++g+s + +v+hvdl++++++++lrsl++s+ + 
  Pbr037485.1 270 TYAPTTLAAaRDFWTLRYTTSLEDGSLVVCERSLTSSTGGPQgptSASFVRAEMLPSGYLIRPCEGGGSIINIVDHVDLDAWSVPEVLRSLYESSKIL 367
                  *************************************99999999***************************************************** PP

                  HHHHHHHHTXXX CS
        START 192 gaktwvatlqrq 203
                  ++kt+ ++l++ 
  Pbr037485.1 368 AQKTTISALRHI 379
                  *******99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-19882IPR009057Homeodomain-like
PROSITE profilePS5007115.6941983IPR001356Homeobox domain
SMARTSM003894.2E-152187IPR001356Homeobox domain
PfamPF000464.3E-162482IPR001356Homeobox domain
CDDcd000862.96E-162484No hitNo description
SuperFamilySSF466891.58E-162485IPR009057Homeodomain-like
CDDcd146863.68E-676115No hitNo description
PROSITE profilePS5084826.711163364IPR002913START domain
CDDcd088752.00E-69167383No hitNo description
Gene3DG3DSA:3.30.530.202.0E-22171377IPR023393START-like domain
SMARTSM002341.8E-48172382IPR002913START domain
PfamPF018524.9E-51173380IPR002913START domain
SuperFamilySSF559616.32E-37173384No hitNo description
SuperFamilySSF559614.4E-5411495No hitNo description
SuperFamilySSF559614.4E-5523596No hitNo description
PfamPF086702.6E-48697841IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MALVMHRDSP GSSSGGRQQM DSSKYVRYTP EQVEALERVY SECPKPSSLR RQQLIRECPI  60
LSNIEPKQIK VWFQNRRCRE KQRKESSRLQ TVNRKLTAMN KLLMEENDRL QKQVSHLVYE  120
NGFMKQQLHT ASGTTTDNSC ESVVMSGQHQ QQQNPTPQHP QRDANNPAGL LAIAEETLAE  180
FLSKATGTAV DWVQMIGMKP GPDSIGIVAV SRNCSGVAAR ACGLVSLEPT KVAEILKDRR  240
SWFRDCRCLE VLSLIPAGNG GTIELVYMQT YAPTTLAAAR DFWTLRYTTS LEDGSLVVCE  300
RSLTSSTGGP QGPTSASFVR AEMLPSGYLI RPCEGGGSII NIVDHVDLDA WSVPEVLRSL  360
YESSKILAQK TTISALRHIR QIAQESSGEI QHGGGRQPDL LGFNDAVNGF ADDGWTLMSS  420
DGVEDVTIAI NSSPKVLGSQ YNTSIFPPFG GGVLCAKASM LLQSVPPALL VRFLREHRSE  480
WADYGVDAYS AACLKASPYA VPLARGGGFP STQNILPLAQ TVEHEEFLEV VRLEGPAFSP  540
EDVALTRDMY LLQLCSGVDE NAVGACAQLV FAPIDESFAD DAPLLPSGFH VIPLDPKADG  600
PTATRTLDLA STLEVGTSGA RAINDADGNS YNRRSVLTIA FQFTFENHLR DNVAAMARQY  660
VRSVVSSVQR VAMAIAPSPL SSQIGPKPLP GCPEAHTLAR WIFRSFRIHT GGELFRVDIS  720
SSDAILKQLW RHSDAIMCCS VKTNTSPVFT FANQAGLDML ETTLVALQDI MLDKILDEAG  780
RKFLCSEFSK IMQQGFAYLP AGICASSMGR PVSYDQAVAW KVVDDDESNH CLALMFMNWS  840
FM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037485.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1774240.0FJ177424.1 Malus x domestica putative PHV HD-ZIPIII mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009344405.10.0PREDICTED: LOW QUALITY PROTEIN: homeobox-leucine zipper protein HOX32-like
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A498IX700.0A0A498IX70_MALDO; Uncharacterized protein
STRINGXP_009344405.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]