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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr033600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NF-YC | ||||||||
Protein Properties | Length: 249aa MW: 27937.7 Da PI: 6.5118 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 173.8 | 1.8e-54 | 60 | 164 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ql+ fw+ q ieka+dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvdi Pbr033600.1 60 QLQEFWSGQmqdIEKASDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI 157 89****99877789************************************************************************************ PP NF-YC 96 vprdelk 102 +prdelk Pbr033600.1 158 IPRDELK 164 ****975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.24E-32 | 34 | 154 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.8E-37 | 74 | 146 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.9E-21 | 82 | 145 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MTSYPPPSYQ SAPMVASGTP AVSVPSPTHP PTTFPDPSHQ LAYQKIQHFH HQQQVQQQMQ 60 LQEFWSGQMQ DIEKASDFKN HSLPLARIKK IMKADEDVRM ISAEAPVIFA KACEIFILEL 120 TLRSWIHTEE NKRRTLQKND IAAAISRTDV FDFLVDIIPR DELKEEALGV TKATLPVVGS 180 PADVPYYYVP QQHPVGAPGM IMGKPVDQAA MYASQQPRPP VSFMPWAQSQ PQQPQQQQQQ 240 AQQQQTDT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 8e-57 | 68 | 160 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 138 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr033600.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009341698.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_009341699.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Swissprot | Q8LCG7 | 2e-77 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A498IT73 | 1e-179 | A0A498IT73_MALDO; Uncharacterized protein | ||||
STRING | XP_009341698.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12372 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 4e-78 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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