PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032698.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 347aa    MW: 37468.6 Da    PI: 8.144
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032698.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.4e-32168226259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+ver+++dp+++++tY+geHnh+
  Pbr032698.1 168 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERNRSDPNMFIVTYTGEHNHP 226
                  79*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-31158228IPR003657WRKY domain
PROSITE profilePS5081135.301162228IPR003657WRKY domain
SuperFamilySSF1182902.88E-27165228IPR003657WRKY domain
SMARTSM007745.7E-39167227IPR003657WRKY domain
PfamPF031065.3E-27169226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEDDWDLQAV VRGCSTATAT TTTSSTRTPS TAATASFNIS GFHSNPAAAS FSSFGPTSPQ  60
QQLLFSPPLP DPIIKPRIAI EELHDLYKPF FPKSQPSLSS PQIAPLTLSP LTTPKDPRHP  120
IQYHQQTQHQ QQQTQHSKPS SSTTTARSKK RKNQLKKVCQ VPAEGLSSDV WAWRKYGQKP  180
IKGSPYPRGY YRCSSSKGCM ARKQVERNRS DPNMFIVTYT GEHNHPAPTH RNSLAGSTRQ  240
KPFSPQTATR GDSAKPASPT TSVSADEETA VAPQSTTVES SCKEEKGSPL ITDEEDELLG  300
MCDSVVSDDF FVGLDGLAGD YFSDHSTGSF GMPWISSSAA TAAGSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-23152229280Disease resistance protein RRS1
5w3x_D2e-23152229280Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145153ARSKKRKNQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032698.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009341117.10.0PREDICTED: WRKY transcription factor 22-like
TrEMBLA0A498KK130.0A0A498KK13_MALDO; Uncharacterized protein
STRINGXP_009341117.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-74WRKY family protein