PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr031037.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 1127aa MW: 126141 Da PI: 9.0961

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr031037.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.2	1.9e-08	45	80	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE + +++a +++G++ Wk++a+ + +R+ +++ Pbr031037.1 45 QWSKEELKHFYEAYRKYGKD-WKKVAAVVR-HRSVEMV 80 6***************99.******9.9998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.37	41	92	IPR017884	SANT domain
SMART	SM00717	7.2E-5	42	90	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	9.72E-11	44	91	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-4	45	79	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-7	45	80	IPR001005	SANT/Myb domain
CDD	cd00167	8.23E-6	46	88	No hit	No description
SMART	SM01135	5.0E-57	623	724	IPR033471	DIRP domain
Pfam	PF06584	1.4E-32	623	723	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1127 aa Download sequence Send to blast
MPPTRKSKSV RKRFSYDNEA SSKHGEHANT SGQKKRKLSD MLGPQWSKEE LKHFYEAYRK 60 YGKDWKKVAA VVRHRSVEMV EALYTMNKAY LSLPEGVASV IGLTAMMTDH YSLLGGSDSE 120 QESIEGVGTP WKPQKHERVK FQTEVSKRFG HIPDSSQSPP MASSNDCLSL LNNRRSGIRP 180 HAVKKRTPRV PVAYSSDKDN SRNYVSPARQ GLKPSVDAKN DDVANEIALA LTEASHRGDS 240 PLVSWKSKRK AKGTPPTVRN GEMMGAESEM TTTRLRAGEM DEGGHELSLG STEADNEDFD 300 RSKKYAVGTE GTDTLDFQRR GKRYSVKKQK VENKSNHFED IKEAGSGTEE GQMRGTIKGK 360 LETKVAKSAR SFYKEQRNKS KKALIAEDEN TPFDALQTLA DLSLMMPETA DTESSAHVRE 420 EDSYVANKSK TKGIHSIPGV EHSALKTSKP GKLKEGGHQS NTGLQKRKQL LPFKVYNDTI 480 QTDCRWSDNQ KIEATVEVNK SMNKGKRSSH YITHPKQGKS MNPLRNASSS TDHEREENNS 540 GLSALGVPSA NQANLPARDS IKLKLDRHKP SIEKDRKSTE GILDEQPDKL VPSFRNSEIN 600 IKERLSNCLS RYQVRRWCAF EWFYSAIDYP WFAKREFVEY LNHVGLGHVP RLTRVEWGVI 660 RSSLGRPRRF SEQFLKEEKE KLNQYRESVR THYAELNAGT REGLPTDLAR PLSVGQHVIA 720 FHPRTREILN GIVLTADHSR CRVQFDQPEL GVEHIMDIDC MPLNPVENLP ASFTKHNVNV 780 NVNKYIENLK ELKGNERLKE GKTEGYKVAS SGHVESTVPC YMQPSPHQIN KSSKQTEIQA 840 KEADIRAIFE LTRALDKKDA VVSELRHMND EVLENQRDGD NFIRDSEPFK KEYAAVLLQL 900 SQVNDQVSSA LFCLRQRNTY RGSPAVSLVK PMANLSDPGG HPSPSGYSCH AQESAGHVFD 960 IVESSRAKAR KMVDAAMQAI SSLRKEDNLD RMEEIIDFVS NRLSDDAGML GPSTTPADPV 1020 RVSEDQPTAC TSKPMETSCS ADPKSNSVSK RNEEKALTDL IINCVAAFLM IQTCTARQFP 1080 PSEVAQVLDE AVTSLQPLCP QNLSVYGEIQ KCMGIIRNQI LALVPT*

Sequence ? help Back to Top

Protein Sequence Length: 1127 aa Download sequence Send to blast

MPPTRKSKSV RKRFSYDNEA SSKHGEHANT SGQKKRKLSD MLGPQWSKEE LKHFYEAYRK  60
YGKDWKKVAA VVRHRSVEMV EALYTMNKAY LSLPEGVASV IGLTAMMTDH YSLLGGSDSE  120
QESIEGVGTP WKPQKHERVK FQTEVSKRFG HIPDSSQSPP MASSNDCLSL LNNRRSGIRP  180
HAVKKRTPRV PVAYSSDKDN SRNYVSPARQ GLKPSVDAKN DDVANEIALA LTEASHRGDS  240
PLVSWKSKRK AKGTPPTVRN GEMMGAESEM TTTRLRAGEM DEGGHELSLG STEADNEDFD  300
RSKKYAVGTE GTDTLDFQRR GKRYSVKKQK VENKSNHFED IKEAGSGTEE GQMRGTIKGK  360
LETKVAKSAR SFYKEQRNKS KKALIAEDEN TPFDALQTLA DLSLMMPETA DTESSAHVRE  420
EDSYVANKSK TKGIHSIPGV EHSALKTSKP GKLKEGGHQS NTGLQKRKQL LPFKVYNDTI  480
QTDCRWSDNQ KIEATVEVNK SMNKGKRSSH YITHPKQGKS MNPLRNASSS TDHEREENNS  540
GLSALGVPSA NQANLPARDS IKLKLDRHKP SIEKDRKSTE GILDEQPDKL VPSFRNSEIN  600
IKERLSNCLS RYQVRRWCAF EWFYSAIDYP WFAKREFVEY LNHVGLGHVP RLTRVEWGVI  660
RSSLGRPRRF SEQFLKEEKE KLNQYRESVR THYAELNAGT REGLPTDLAR PLSVGQHVIA  720
FHPRTREILN GIVLTADHSR CRVQFDQPEL GVEHIMDIDC MPLNPVENLP ASFTKHNVNV  780
NVNKYIENLK ELKGNERLKE GKTEGYKVAS SGHVESTVPC YMQPSPHQIN KSSKQTEIQA  840
KEADIRAIFE LTRALDKKDA VVSELRHMND EVLENQRDGD NFIRDSEPFK KEYAAVLLQL  900
SQVNDQVSSA LFCLRQRNTY RGSPAVSLVK PMANLSDPGG HPSPSGYSCH AQESAGHVFD  960
IVESSRAKAR KMVDAAMQAI SSLRKEDNLD RMEEIIDFVS NRLSDDAGML GPSTTPADPV  1020
RVSEDQPTAC TSKPMETSCS ADPKSNSVSK RNEEKALTDL IINCVAAFLM IQTCTARQFP  1080
PSEVAQVLDE AVTSLQPLCP QNLSVYGEIQ KCMGIIRNQI LALVPT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr031037.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM437233	2e-34	AM437233.2 Vitis vinifera contig VV78X223624.13, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009339835.1	0.0	PREDICTED: protein ALWAYS EARLY 3-like isoform X2
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A498HKI7	0.0	A0A498HKI7_MALDO; Uncharacterized protein
STRING	XP_009339834.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]