PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr023778.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 724aa    MW: 79101.9 Da    PI: 10.6512
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr023778.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding315.8e-103385247
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47
                      +W t+E++ll++avk++G ++W+t+a +++       +  t+ +c ++++++
      Pbr023778.1 33 SSWGTWEELLLACAVKRHGVHDWDTVAMELQaktslppLLTTASNCNLKYLDL 85
                     57*****************************8888888667888888887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00413188IPR001005SANT/Myb domain
PfamPF002492.4E-83385IPR001005SANT/Myb domain
CDDcd001677.87E-53567No hitNo description
Gene3DG3DSA:1.20.920.103.0E-16310441IPR001487Bromodomain
SMARTSM002972.9E-17318427IPR001487Bromodomain
CDDcd043694.65E-15325422No hitNo description
SuperFamilySSF473704.45E-18326424IPR001487Bromodomain
PfamPF004393.5E-10332411IPR001487Bromodomain
PROSITE profilePS5001412.043337408IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MKGGAAAAAD TPSFNNNNNN ITTTSDQTTT STSSWGTWEE LLLACAVKRH GVHDWDTVAM  60
ELQAKTSLPP LLTTASNCNL KYLDLRRRFH SRQQNDDVPP DADEVHHDPH NNNTTNIPWL  120
DDLRKLRVAQ LRQELHGFDV SIVSLQLKVK RLEEEREDSF KDDNPKPDLE EEQQQDSNRH  180
RSENDKTVRG KPDGSKPDHE NQSVNGSNST CSKNLDHDNK PGPGDRALSE PGPLSAGSDE  240
PSKKTGSGQP DSDSDKGSSE TVAKKRRVRG RQGKGGGDSA GELRESSEAQ SSVSLTKKKN  300
GKRHRRMEVP EQQQQHNNED VSLVKSEPLI EVLQLIRAHE HGSLFERRLS AQESDKYKSI  360
VQQHVDLETI QSKLRKDSYS SCSLSFYRDL LLLFNNAVVF FPKSSLHSKT AHQLRRLVLN  420
EMKKKNLITR PNHDPAPEPS DSVVPAPATS QQPKRPDQLE RSDSLLSKQK STAPIIVCRK  480
RSSISSKPSA AAPSFGQTLK GDDNKKAAAF DLKSSIKNSK ASSDNHAAAQ KHGGSVVLKS  540
AAAAKAKDNP VITGTRGSRR TSTSIAHHEN NTSASKKKQS ASPASLKAET PKADKNGKME  600
AAGSDKKRSA AADFLKRIKR NSPADTLKRG GTGTGTSSRS GGEQKRRGGI GKADKVKERV  660
LRQSGNKKKQ AKEESSSPSR RSVGRPPKKA AAEAANAVAS PKRARESGGK QEASRRPKKR  720
SRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1714720RRPKKRS
2714722RRPKKRSRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr023778.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6532250.0AY653225.1 Malus x domestica TFCR (TFCR) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018502620.10.0PREDICTED: uncharacterized protein LOC103945928
TrEMBLA0A498JE580.0A0A498JE58_MALDO; Uncharacterized protein
STRINGXP_009354803.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.14e-82DNA-binding bromodomain-containing protein