PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr023691.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 539aa    MW: 58922.8 Da    PI: 6.9648
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr023691.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30303361259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dg++WrKYGqK+ kg+++pr+YYrCt++ gCpv+k+v+r+aed++++++tYeg+Hnh+
  Pbr023691.1 303 SDGCQWRKYGQKMAKGNPCPRAYYRCTMRtGCPVRKQVQRCAEDQTILITTYEGHHNHP 361
                  7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.3E-34287363IPR003657WRKY domain
SuperFamilySSF1182906.8E-28295363IPR003657WRKY domain
PROSITE profilePS5081129.769297363IPR003657WRKY domain
SMARTSM007742.8E-36302362IPR003657WRKY domain
PfamPF031061.1E-26304361IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MESSASDHSI HNCRFVLSSE TTNDHDHGKR VVDELDFFAD KGHLKEDRDH TAEVKEECER  60
HGVGQEKQLP DVNIGLNLLT TNTSSEKSSM DDGTSSSQTT ENKHRTNQLA VLRAELGRMN  120
VENQQLRGAI HQLNTHYQAL QVHLVTLMQR QKNQKIDYQT AEQHKMNING SVVLEEKQMM  180
NGINNLAPRQ FMDMGRAEKD ELSQCSHEGC RSQDCSGSPP RNDIVESMEC CKSTSHVHRD  240
ISGRSRTAGG EDSPDQELQG WIPKKVPKLM SRREVDQPSS EAMSMIKKAR VSVRARSEAS  300
MISDGCQWRK YGQKMAKGNP CPRAYYRCTM RTGCPVRKQV QRCAEDQTIL ITTYEGHHNH  360
PLPPAAMAMA STTSAAASML LSGSMPSADG LISSNSFLAR TGLPNCPPSL ATLSASAPFP  420
TVTLDLTRTP TSSEMPLGQP NQLPPNFPHN NLMSVPQVLG QALCNQSNFS VLDSLQGLDS  480
TTHSLADKIS AATAAITADP NFTAALVAAI TSIVGNGHSN NNTYNNVATR NNSDDNTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-22289365176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr023691.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018497830.10.0PREDICTED: probable WRKY transcription factor 31
TrEMBLA0A498KCD90.0A0A498KCD9_MALDO; Uncharacterized protein
STRINGXP_009361023.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.16e-98WRKY family protein