PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr022333.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 369aa MW: 40924.8 Da PI: 7.136

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr022333.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.7	2.2e-53	28	155	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeelvv+yLkkkv++ +l++ ++i++vd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++ + Pbr022333.1 28 LPPGFRFHPTDEELVVQYLKKKVTSAPLPV-SIIADVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSgGI 124 79**************************.89***********988899***********************************99556 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kk Lvfy g+ pkg kt+W+mheyrl Pbr022333.1 125 QKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 155 77*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.76E-64	24	189	IPR003441	NAC domain
PROSITE profile	PS51005	61.637	28	189	IPR003441	NAC domain
Pfam	PF02365	5.6E-28	29	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MESTDSSTGS QQEQQQPPQP PPPPQPNLPP GFRFHPTDEE LVVQYLKKKV TSAPLPVSII 60 ADVDLYKFDP WELPAKATFG EQEWYFFSPR DRKYPNGARP NRAATSGYWK ATGTDKPVLT 120 SGGIQKVGVK KALVFYGGKP PKGIKTNWIM HEYRLADNKP NNKPPGWDLG NKKNSLRLDD 180 WVLCRIYKKN NTHSPMDHER EDSMGDIMGP LMPPSMTHVG HHQDMKLHLP KSNLSYGPPF 240 MENDQIFFDG IMSSTDGSAS TPQLPLKRPI VPSLYWNNQE EDDQTAADPS SSKRIQLHQL 300 DTGTNSNGDG INGGATNNNS TSIANLLSQL PQTPSLHEHA VLGSLGDGLF RTPYQLPGRN 360 WYSDSNLG*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MESTDSSTGS QQEQQQPPQP PPPPQPNLPP GFRFHPTDEE LVVQYLKKKV TSAPLPVSII  60
ADVDLYKFDP WELPAKATFG EQEWYFFSPR DRKYPNGARP NRAATSGYWK ATGTDKPVLT  120
SGGIQKVGVK KALVFYGGKP PKGIKTNWIM HEYRLADNKP NNKPPGWDLG NKKNSLRLDD  180
WVLCRIYKKN NTHSPMDHER EDSMGDIMGP LMPPSMTHVG HHQDMKLHLP KSNLSYGPPF  240
MENDQIFFDG IMSSTDGSAS TPQLPLKRPI VPSLYWNNQE EDDQTAADPS SSKRIQLHQL  300
DTGTNSNGDG INGGATNNNS TSIANLLSQL PQTPSLHEHA VLGSLGDGLF RTPYQLPGRN  360
WYSDSNLG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-73	22	192	11	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-73	22	192	11	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-73	22	192	11	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-73	22	192	11	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-73	22	192	14	171	NAC domain-containing protein 19
3swm_B	1e-73	22	192	14	171	NAC domain-containing protein 19
3swm_C	1e-73	22	192	14	171	NAC domain-containing protein 19
3swm_D	1e-73	22	192	14	171	NAC domain-containing protein 19
3swp_A	1e-73	22	192	14	171	NAC domain-containing protein 19
3swp_B	1e-73	22	192	14	171	NAC domain-containing protein 19
3swp_C	1e-73	22	192	14	171	NAC domain-containing protein 19
3swp_D	1e-73	22	192	14	171	NAC domain-containing protein 19
4dul_A	1e-73	22	192	11	168	NAC domain-containing protein 19
4dul_B	1e-73	22	192	11	168	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr022333.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF198116	0.0	KF198116.1 Malus hupehensis NAC domain protein (NAC32) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009378497.1	0.0	PREDICTED: NAC transcription factor 56-like
Swissprot	Q9LD44	1e-113	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A498IPC8	0.0	A0A498IPC8_MALDO; Uncharacterized protein
STRING	XP_009378497.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1623	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-116	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]