PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr015149.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 174aa MW: 18943.1 Da PI: 10.3196 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 38.5 | 2.3e-12 | 111 | 133 | 1 | 23 |
---SS-EEEEEEE--TT-SS-EE CS WRKY 1 ldDgynWrKYGqKevkgsefprs 23 ldDgy+WrKYGqK vk+++fprs Pbr015149.1 111 LDDGYRWRKYGQKAVKNNKFPRS 133 59********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-13 | 96 | 133 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-10 | 103 | 133 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.242 | 106 | 133 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-6 | 111 | 149 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-8 | 112 | 133 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 174 aa Download sequence Send to blast |
MENYPTFFSS STSPAPSSLS LNMGNPAHHA YNSTDLRQFQ SSKSSNGFLG LMSEMGASNN 60 MIKNNFSSQG KSVGGSGTSA PTVRLGMKKG DQKKIRKPRY AFQTRSQVDI LDDGYRWRKY 120 GQKAVKNNKF PRSSVIDHGV LSLLKSCNSL DGLAAASETS YHNVETEPHI GER* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr015149.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF887982 | 0.0 | KF887982.1 Malus baccata WRKY75 (WRKY75) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009372253.1 | 2e-85 | PREDICTED: probable WRKY transcription factor 75 | ||||
TrEMBL | W8E2P5 | 3e-83 | W8E2P5_MALBA; WRKY75 | ||||
STRING | XP_009372253.1 | 8e-85 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1156 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13080.1 | 7e-22 | WRKY DNA-binding protein 75 |