PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr006380.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 347aa    MW: 37597.7 Da    PI: 7.5261
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr006380.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986e-31168226259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+ver+++dp+++++tY+ eHnh+
  Pbr006380.1 168 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERNKSDPNIFIVTYTAEHNHP 226
                  79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.5E-31158228IPR003657WRKY domain
PROSITE profilePS5081134.521162228IPR003657WRKY domain
SuperFamilySSF1182903.27E-26165228IPR003657WRKY domain
SMARTSM007741.2E-36167227IPR003657WRKY domain
PfamPF031064.3E-26169226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEDDWDLQAV VRGCFTATTT SNTTTTSTRA SSTAATTSIS GFHSNPAAAS FSSFDQTSQQ  60
QQLLFCLPLS DPIIKPKSAI EELHDLYRPF YPKSQPPLSS PQITPPTLSP LTSLSSLTTP  120
KDQTHPIQYH RQQQTQHSKP SSSTTARSKK RKNQLKKVCQ VPAEGLSSDI WAWRKYGQKP  180
IKGSPYPRGY YRCSSSKGCM ARKQVERNKS DPNIFIVTYT AEHNHPAPTH RNSLAGSTRQ  240
KPLSPQKTTG GDSAKPTSPT TSASVDEEPV VAGRSTTVES SCKEEKGSPL ITDEEDELLG  300
ICDSVVSDDF FEGLDGLAED YFSDHSPVSF GMPWISSSAA TAAGSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-23152229280Disease resistance protein RRS1
5w3x_D3e-23152229280Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145153ARSKKRKNQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr006380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009350327.10.0PREDICTED: WRKY transcription factor 22-like
TrEMBLA0A498JIN80.0A0A498JIN8_MALDO; Uncharacterized protein
STRINGXP_009350327.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-64WRKY family protein