PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr003453.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

CAMTA

Protein Properties

Length: 865aa MW: 97469.9 Da PI: 7.0352

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr003453.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	160.7	2.8e-50	3	117	3	117
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100 + k+rwl+++ei+aiL n++ ++++l++ + pksg+++L++rk +r+frkDG++wkkk dgktv+E+he+LKvg+ e +++yYah+e+ ptf rrcyw Pbr003453.1 3 EAKSRWLRPNEIHAILYNYKYFTVHLKPVNLPKSGTIVLFDRKLLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERVHVYYAHGEDSPTFVRRCYW 100 459********************************************************************************************* PP CG-1 101 lLeeelekivlvhylev 117 lL+++le+ivlvhy+e+ Pbr003453.1 101 LLDKRLEHIVLVHYRET 117 *************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	73.717	1	123	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.3E-70	1	118	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.4E-44	3	116	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	5.5E-6	337	429	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	1.36E-14	339	426	IPR014756	Immunoglobulin E-set
Pfam	PF01833	1.8E-5	340	425	IPR002909	IPT domain
CDD	cd00204	2.28E-12	499	633	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.4E-15	523	636	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	9.48E-16	536	635	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	4.6E-7	536	603	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.141	541	606	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.621	574	606	IPR002110	Ankyrin repeat
SMART	SM00248	9.2E-6	574	603	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	7.602	819	847	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 865 aa Download sequence Send to blast
MEEAKSRWLR PNEIHAILYN YKYFTVHLKP VNLPKSGTIV LFDRKLLRNF RKDGHNWKKK 60 NDGKTVKEAH EHLKVGNEER VHVYYAHGED SPTFVRRCYW LLDKRLEHIV LVHYRETREG 120 SPVTPVNSNS SSVSDPSAPS FLSEEHDSVA NNAYYAGENE LQELGDGLTV NNHEQRLHDI 180 NTLEWDELLV KNDSKGDNIS GYDQQNQVVG NGSISGGTSS LSAEISSFGN LTNPTVGSEN 240 IQFNLSGTPC VETLLGDMNS NVQRRDYIAK ATCGSVDVLH NNGLHSQDSF GRWINQIMTE 300 STASVEDPVL DCSFSAAQNS FASPTMDHLQ SSVPQQIFNI TDISPTWAFS NEKTKILITG 360 FLHQEFFQLA KSDLLCVCGD VCLPAEIVQA GVYRCFVPPH SPRVVNLFMS IDGHKPISQE 420 LNFEYRAPVL SDTLVSSEGN KREEFQAQMR LAYLLFSSSH SLNILSSKVP PNALKEAKKF 480 SHRTSHMSNH WPYLMKAVED NKTPLPLAKD SLFELILKNR LKDWLLEKVV QVSKTKEYDA 540 HGQGVIHLCA ILEYTWAVRL FSWSGLSLDF RDRRGWTALH WAAYCGREKM VAVLLSAGAK 600 PNLVTDPTPD NPGGCTAADF AFMKGYDGLS AYLSEKALVE QFNAMSVAGN VSGSLEISSS 660 YAANSENLSE EDLYLKDTLA AYRTTADAAA RIQAAFRENS LKQKTKAVQY SIPEAEARGI 720 IAALKIQHAF RNLKRFSIPF QRLKHVAAFR GFQVRRQYRK VLWSVGVLEK AVLRWRFRRR 780 GLRGLNVAPA EVSVDQDQES DTEEDFYRAS QKQAEERVER SVIRVQAMFR SKKAQEEYAR 840 MKMAHNQATL EFDDFLDPDA IMDN*

Sequence ? help Back to Top

Protein Sequence Length: 865 aa Download sequence Send to blast

MEEAKSRWLR PNEIHAILYN YKYFTVHLKP VNLPKSGTIV LFDRKLLRNF RKDGHNWKKK  60
NDGKTVKEAH EHLKVGNEER VHVYYAHGED SPTFVRRCYW LLDKRLEHIV LVHYRETREG  120
SPVTPVNSNS SSVSDPSAPS FLSEEHDSVA NNAYYAGENE LQELGDGLTV NNHEQRLHDI  180
NTLEWDELLV KNDSKGDNIS GYDQQNQVVG NGSISGGTSS LSAEISSFGN LTNPTVGSEN  240
IQFNLSGTPC VETLLGDMNS NVQRRDYIAK ATCGSVDVLH NNGLHSQDSF GRWINQIMTE  300
STASVEDPVL DCSFSAAQNS FASPTMDHLQ SSVPQQIFNI TDISPTWAFS NEKTKILITG  360
FLHQEFFQLA KSDLLCVCGD VCLPAEIVQA GVYRCFVPPH SPRVVNLFMS IDGHKPISQE  420
LNFEYRAPVL SDTLVSSEGN KREEFQAQMR LAYLLFSSSH SLNILSSKVP PNALKEAKKF  480
SHRTSHMSNH WPYLMKAVED NKTPLPLAKD SLFELILKNR LKDWLLEKVV QVSKTKEYDA  540
HGQGVIHLCA ILEYTWAVRL FSWSGLSLDF RDRRGWTALH WAAYCGREKM VAVLLSAGAK  600
PNLVTDPTPD NPGGCTAADF AFMKGYDGLS AYLSEKALVE QFNAMSVAGN VSGSLEISSS  660
YAANSENLSE EDLYLKDTLA AYRTTADAAA RIQAAFRENS LKQKTKAVQY SIPEAEARGI  720
IAALKIQHAF RNLKRFSIPF QRLKHVAAFR GFQVRRQYRK VLWSVGVLEK AVLRWRFRRR  780
GLRGLNVAPA EVSVDQDQES DTEEDFYRAS QKQAEERVER SVIRVQAMFR SKKAQEEYAR  840
MKMAHNQATL EFDDFLDPDA IMDN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	43	59	RKLLRNFRKDGHNWKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr003453.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208139	2e-31	AC208139.1 Populus trichocarpa clone JGIACSB13-D20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018501324.1	0.0	PREDICTED: calmodulin-binding transcription activator 5-like isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A498IFY7	0.0	A0A498IFY7_MALDO; Uncharacterized protein
STRING	XP_009348884.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]